prot_S-ischiensis_contig9.20678.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig9.20678.1
Unique Nameprot_S-ischiensis_contig9.20678.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length233
Homology
BLAST of mRNA_S-ischiensis_contig9.20678.1 vs. uniprot
Match: A0A6H5L4Y3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y3_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 1.790e-42
Identity = 83/203 (40.89%), Postives = 119/203 (58.62%), Query Frame = 0
Query:    6 KRSEDLPFASAGRTPPRHLRELKTPSISSPTLISWAWTLCAAMLVLFGVRHCRNSSEMCRLQCDPDACTFLR-KVSGVEEFRHAFPRDHLVKAETVRVS-GGKVATGRKPNRRKQKTMGQSYSVTWRTYAETGRETGHVTETLSNRGLGRKKPRTRVGEIMAYIHRQKDELDVVEEKWTSGLGIVCTIFGALLLVMRLAVGDL 206
            KR  DLP AS GR+P    R+L  P  +   + S+ W LC   L+  G  HC   SE  RL C  D C F R  +         F R+ LVKAE   +   G++  G++ +RR+++ M Q+Y+VTW+  AET  ET   T  +++ GLGRK PR +V  IM Y+ RQ D+LDV E +W +G+GIVC +FG +L+++R+ VG +
Sbjct:    3 KRGVDLPMASGGRSPTPPRRQLNMPDATPANVFSFTWVLCGFALICIGYGHCSRHSEQSRLYCAEDVCRFSRDSMENRSRKEFQFLRESLVKAEVAHLDKNGELVRGKRASRRQKRGMAQTYTVTWKD-AETQDET---TLPIASYGLGRKVPRAKVARIMQYVQRQIDDLDVKEGRWFTGIGIVCFVFGGVLILLRVVVGSI 201          
BLAST of mRNA_S-ischiensis_contig9.20678.1 vs. uniprot
Match: A0A835YLB3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLB3_9STRA)

HSP 1 Score: 137 bits (345), Expect = 9.010e-37
Identity = 80/185 (43.24%), Postives = 119/185 (64.32%), Query Frame = 0
Query:   24 LRELKTPSISSPTLISWAWTLCAAMLVLFGVRHCRNSSEMCRLQCDPDAC--TFLRKVSGVEEFRHAFPRDHLVKAETVRVSGGKVATGRKPNRRKQKTMGQSYSVTWRTYAETGRETGHVTETLSNRGLGRKKPRTRVGEIMAYIHRQKDELDVVEEKWTSGLGIVCTIFGALLLVMRLAVGDL 206
            +REL  P ++   L+SW WTL    L +FG   CR++SE  R+ CD   C  T +R  + +EE   AFPR +L+ AE VR+  G++      +R+K++T   SY++ W    +  R+T H+   +S+RGLGR+ PR+RV EIM YI R+  E+DV + ++TSG+G++C IFG LLL+MR AVG+L
Sbjct:    1 MREL--PKVTPLKLLSWCWTLFGLFLSVFGFLKCRSNSESSRIACDSTDCVVTMVRGGAVIEET--AFPRVNLMSAELVRLYQGEIVDPTSLSRQKRRTTASSYAIKW---LDAQRQT-HM-RPMSSRGLGRQVPRSRVQEIMKYIKREIHEVDVSQARYTSGVGLICCIFGVLLLLMRAAVGNL 176          
BLAST of mRNA_S-ischiensis_contig9.20678.1 vs. uniprot
Match: D7FT18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT18_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 9.920e-30
Identity = 65/156 (41.67%), Postives = 94/156 (60.26%), Query Frame = 0
Query:   53 GVRHCRNSSEMCRLQCDPDACTFLR-KVSGVEEFRHAFPRDHLVKAETVRVSG-GKVATGRKPNRRKQKTMGQSYSVTWRTYAETGRETGHVTETLSNRGLGRKKPRTRVGEIMAYIHRQKDELDVVEEKWTSGLGIVCTIFGALLLVMRLAVGDL 206
            G  HC   SE  RL C  D C F R            F R+ LVKAE   +   G++  G++ +RR+++ M Q+Y+VTW+  AET  ET   T  +++ GLGRK PR +V  IM Y+ RQ D+LDV E +W +G+GIVC +FG +L+++R+ VG +
Sbjct:    2 GYGHCSRHSEQSRLYCAEDVCRFSRDSTENRSRIEFQFLRESLVKAEVAHLDKKGELVRGKRASRRQKRGMAQTYTVTWKD-AETQDET---TLPIASYGLGRKVPRAKVARIMQYVQRQIDDLDVKEGRWFTGIGIVCFVFGGVLILLRVVVGSI 153          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20678.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L4Y3_9PHAE1.790e-4240.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YLB3_9STRA9.010e-3743.24Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FT18_ECTSI9.920e-3041.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 204..232
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 181..203
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 55..180
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..36
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 37..54
NoneNo IPR availableTMHMMTMhelixcoord: 181..203
NoneNo IPR availableTMHMMTMhelixcoord: 32..54

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2605890..2609091 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20678.1mRNA_S-ischiensis_contig9.20678.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig9 2604582..2609107 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig9.20678.1 ID=prot_S-ischiensis_contig9.20678.1|Name=mRNA_S-ischiensis_contig9.20678.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=233bp
MIWRGKRSEDLPFASAGRTPPRHLRELKTPSISSPTLISWAWTLCAAMLV
LFGVRHCRNSSEMCRLQCDPDACTFLRKVSGVEEFRHAFPRDHLVKAETV
RVSGGKVATGRKPNRRKQKTMGQSYSVTWRTYAETGRETGHVTETLSNRG
LGRKKPRTRVGEIMAYIHRQKDELDVVEEKWTSGLGIVCTIFGALLLVMR
LAVGDLRGVSPEPRRPAPEQRRRSRTARKPRH*
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