prot_S-ischiensis_contig9.20639.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig9.20639.1
Unique Nameprot_S-ischiensis_contig9.20639.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length51
Homology
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BLAST of mRNA_S-ischiensis_contig9.20639.1 vs. uniprot
Match: D7FMU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMU3_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 3.170e-17
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 0 
Query:    1 STRQQVRKAKTWITDMKYSANGSLLVAAAFDGQIYVHDAADHYSLRVTTGE 51
            +T+++VR AKTWI+DMKYS +G+LL  A   GQIYVHDAADHYSL+ TT E
Sbjct:    3 ATKREVRNAKTWISDMKYSRDGALLAVATSSGQIYVHDAADHYSLKSTTSE 53
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BLAST of mRNA_S-ischiensis_contig9.20639.1 vs. uniprot
Match: A0A6H5L9W0_9PHAE (HELP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9W0_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.940e-13
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 0 
Query:    4 QQVRKAKTWITDMKYSANGSLLVAAAFDGQIYVHDAADHYSLRVTT 49
            ++VR AKTWI+DMKYS +G+LL  A   GQIYVHDAADHYSL+ TT
Sbjct:  925 EEVRSAKTWISDMKYSKDGALLAVATSSGQIYVHDAADHYSLKCTT 970
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20639.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMU3_ECTSI3.170e-1766.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L9W0_9PHAE1.940e-1369.57HELP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..51
e-value: 9.5E-6
score: 26.7
NoneNo IPR availableSUPERFAMILY82171DPP6 N-terminal domain-likecoord: 7..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2188177..2188329 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20639.1mRNA_S-ischiensis_contig9.20639.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig9 2188177..2188329 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig9.20639.1 ID=prot_S-ischiensis_contig9.20639.1|Name=mRNA_S-ischiensis_contig9.20639.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=51bp
STRQQVRKAKTWITDMKYSANGSLLVAAAFDGQIYVHDAADHYSLRVTTG
E
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf