mRNA_S-ischiensis_contig9.20639.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20639.1
Unique NamemRNA_S-ischiensis_contig9.20639.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20639.1 vs. uniprot
Match: D7FMU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMU3_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 3.170e-17
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 STRQQVRKAKTWITDMKYSANGSLLVAAAFDGQIYVHDAADHYSLRVTTGE 153
            +T+++VR AKTWI+DMKYS +G+LL  A   GQIYVHDAADHYSL+ TT E
Sbjct:    3 ATKREVRNAKTWISDMKYSRDGALLAVATSSGQIYVHDAADHYSLKSTTSE 53
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BLAST of mRNA_S-ischiensis_contig9.20639.1 vs. uniprot
Match: A0A6H5L9W0_9PHAE (HELP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9W0_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.940e-13
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:   10 QQVRKAKTWITDMKYSANGSLLVAAAFDGQIYVHDAADHYSLRVTT 147
            ++VR AKTWI+DMKYS +G+LL  A   GQIYVHDAADHYSL+ TT
Sbjct:  925 EEVRSAKTWISDMKYSKDGALLAVATSSGQIYVHDAADHYSLKCTT 970
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMU3_ECTSI3.170e-1766.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L9W0_9PHAE1.940e-1369.57HELP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2188177..2188329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-09_002530.1
Exons1
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817392.1732132-CDS-S-ischiensis_contig9:2188176..21883291622817392.1732132-CDS-S-ischiensis_contig9:2188176..2188329Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2188177..2188329 +
1695741079.5774982-CDS-S-ischiensis_contig9:2188176..21883291695741079.5774982-CDS-S-ischiensis_contig9:2188176..2188329Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2188177..2188329 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20639.1prot_S-ischiensis_contig9.20639.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2188177..2188329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20639.1

>prot_S-ischiensis_contig9.20639.1 ID=prot_S-ischiensis_contig9.20639.1|Name=mRNA_S-ischiensis_contig9.20639.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=51bp
STRQQVRKAKTWITDMKYSANGSLLVAAAFDGQIYVHDAADHYSLRVTTG
E
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mRNA from alignment at S-ischiensis_contig9:2188177..2188329+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20639.1 ID=mRNA_S-ischiensis_contig9.20639.1|Name=mRNA_S-ischiensis_contig9.20639.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=153bp|location=Sequence derived from alignment at S-ischiensis_contig9:2188177..2188329+ (Schizocladia ischiensis KU_0333)
TCGACACGACAACAGGTGCGCAAGGCCAAGACCTGGATAACAGACATGAA
GTACTCGGCCAACGGGAGCCTGCTGGTGGCGGCCGCCTTCGACGGGCAGA
TATATGTACACGACGCCGCCGACCACTACAGCCTGCGGGTCACCACAGGT
GAA
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2188177..2188329+

>mRNA_S-ischiensis_contig9.20639.1 ID=mRNA_S-ischiensis_contig9.20639.1|Name=mRNA_S-ischiensis_contig9.20639.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=306bp|location=Sequence derived from alignment at S-ischiensis_contig9:2188177..2188329+ (Schizocladia ischiensis KU_0333)
TCGACACGACAACAGGTGCGCAAGGCCAAGACCTGGATAACAGACATGAA
GTACTCGGCCAACGGGAGCCTGCTGGTGGCGGCCGCCTTCGACGGGCAGA
TATATGTACACGACGCCGCCGACCACTACAGCCTGCGGGTCACCACAGGT
GAATCGACACGACAACAGGTGCGCAAGGCCAAGACCTGGATAACAGACAT
GAAGTACTCGGCCAACGGGAGCCTGCTGGTGGCGGCCGCCTTCGACGGGC
AGATATATGTACACGACGCCGCCGACCACTACAGCCTGCGGGTCACCACA
GGTGAA
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