prot_S-ischiensis_contig9.20603.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig9.20603.1
Unique Nameprot_S-ischiensis_contig9.20603.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length343
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig9.20603.1 vs. uniprot
Match: A0A6H5JNU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNU7_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 2.560e-12
Identity = 50/166 (30.12%), Postives = 82/166 (49.40%), Query Frame = 0 
Query:  133 LQVRAVSQHLTSLTLLGSFIADLDVAADWLFVTTGLGGQGMD-----------LTIAAWFFAALGTLLHLLMVCECHAVAKIVKSCGGDVRPRHYPSVGLQLIVGLFLEDIPQVAITAVAGSALTTFEGGLNVTTAAFAAVAKFAEACATRRQPSLPAQLQVAKTD 287
            L+ R +   +T + LL SF+ DLD+  DW+F+  GL GQG +           +   A FFA +GT++  L   E   ++K+        +   +  +G QL+  +FLED+PQ  IT +     T+  G LN+  +  +  AK     +++R PSL  Q ++   D
Sbjct:  204 LKRRTILSRITPIVLLSSFVGDLDLITDWMFLKYGLAGQGENTKAEGCLQRFLIRKLALFFAIVGTVMWALSTTEFSLMSKLKNMW----KVLQHVGLGWQLLANVFLEDVPQFIITVITRP--TSVTGVLNLCASGLSLCAKIIHGISSQRAPSLSTQFKMIDQD 363
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20603.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JNU7_9PHAE2.560e-1230.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 142..163
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..141
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 175..195
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 196..342
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 164..174
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.475

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1843499..1844527 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20603.1mRNA_S-ischiensis_contig9.20603.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig9 1843396..1848069 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig9.20603.1 ID=prot_S-ischiensis_contig9.20603.1|Name=mRNA_S-ischiensis_contig9.20603.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=343bp
MLHVLYLLWLRGWYWRDLPRDPYVSSWRYGWRLMTGTLPRDEKAVIAQVG
GADAQVSHDVEAPAQASGAGESEKKAEEAGLLEMTEDGGRTGRHMQGAEG
NAPVSTTVANQNEQGRDGGGAENPGDADAKTHLQVRAVSQHLTSLTLLGS
FIADLDVAADWLFVTTGLGGQGMDLTIAAWFFAALGTLLHLLMVCECHAV
AKIVKSCGGDVRPRHYPSVGLQLIVGLFLEDIPQVAITAVAGSALTTFEG
GLNVTTAAFAAVAKFAEACATRRQPSLPAQLQVAKTDRGCWPTWTSWTRS
KIRSSRQLGQPTFSRRSKLGARSMPGSCGDCARWLRHTPRHS*
back to top