mRNA_S-ischiensis_contig9.20603.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20603.1
Unique NamemRNA_S-ischiensis_contig9.20603.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20603.1 vs. uniprot
Match: A0A6H5JNU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNU7_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 2.510e-11
Identity = 50/166 (30.12%), Postives = 82/166 (49.40%), Query Frame = 2 
Query:  500 LQVRAVSQHLTSLTLLGSFIADLDVAADWLFVTTGLGGQGMD-----------LTIAAWFFAALGTLLHLLMVCECHAVAKIVKSCGGDVRPRHYPSVGLQLIVGLFLEDIPQVAITAVAGSALTTFEGGLNVTTAAFAAVAKFAEACATRRQPSLPAQLQVAKTD 964
            L+ R +   +T + LL SF+ DLD+  DW+F+  GL GQG +           +   A FFA +GT++  L   E   ++K+        +   +  +G QL+  +FLED+PQ  IT +     T+  G LN+  +  +  AK     +++R PSL  Q ++   D
Sbjct:  204 LKRRTILSRITPIVLLSSFVGDLDLITDWMFLKYGLAGQGENTKAEGCLQRFLIRKLALFFAIVGTVMWALSTTEFSLMSKLKNMW----KVLQHVGLGWQLLANVFLEDVPQFIITVITRP--TSVTGVLNLCASGLSLCAKIIHGISSQRAPSLSTQFKMIDQD 363
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JNU7_9PHAE2.510e-1130.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1843396..1848069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size3264
Cds size1029
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20603.1prot_S-ischiensis_contig9.20603.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1843499..1844527 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817388.5608222-UTR-S-ischiensis_contig9:1843395..18434981622817388.5608222-UTR-S-ischiensis_contig9:1843395..1843498Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1843396..1843498 +
1695741076.6431396-UTR-S-ischiensis_contig9:1843395..18434981695741076.6431396-UTR-S-ischiensis_contig9:1843395..1843498Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1843396..1843498 +
1622817388.5840898-UTR-S-ischiensis_contig9:1844527..18449081622817388.5840898-UTR-S-ischiensis_contig9:1844527..1844908Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1844528..1844908 +
1695741076.66577-UTR-S-ischiensis_contig9:1844527..18449081695741076.66577-UTR-S-ischiensis_contig9:1844527..1844908Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1844528..1844908 +
1622817388.594783-UTR-S-ischiensis_contig9:1845607..18456791622817388.594783-UTR-S-ischiensis_contig9:1845607..1845679Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1845608..1845679 +
1695741076.6771243-UTR-S-ischiensis_contig9:1845607..18456791695741076.6771243-UTR-S-ischiensis_contig9:1845607..1845679Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1845608..1845679 +
1622817388.6053245-UTR-S-ischiensis_contig9:1846390..18480691622817388.6053245-UTR-S-ischiensis_contig9:1846390..1848069Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1846391..1848069 +
1695741076.690088-UTR-S-ischiensis_contig9:1846390..18480691695741076.690088-UTR-S-ischiensis_contig9:1846390..1848069Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1846391..1848069 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817388.5725873-CDS-S-ischiensis_contig9:1843498..18445271622817388.5725873-CDS-S-ischiensis_contig9:1843498..1844527Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1843499..1844527 +
1695741076.6539717-CDS-S-ischiensis_contig9:1843498..18445271695741076.6539717-CDS-S-ischiensis_contig9:1843498..1844527Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1843499..1844527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20603.1

>prot_S-ischiensis_contig9.20603.1 ID=prot_S-ischiensis_contig9.20603.1|Name=mRNA_S-ischiensis_contig9.20603.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=343bp
MLHVLYLLWLRGWYWRDLPRDPYVSSWRYGWRLMTGTLPRDEKAVIAQVG
GADAQVSHDVEAPAQASGAGESEKKAEEAGLLEMTEDGGRTGRHMQGAEG
NAPVSTTVANQNEQGRDGGGAENPGDADAKTHLQVRAVSQHLTSLTLLGS
FIADLDVAADWLFVTTGLGGQGMDLTIAAWFFAALGTLLHLLMVCECHAV
AKIVKSCGGDVRPRHYPSVGLQLIVGLFLEDIPQVAITAVAGSALTTFEG
GLNVTTAAFAAVAKFAEACATRRQPSLPAQLQVAKTDRGCWPTWTSWTRS
KIRSSRQLGQPTFSRRSKLGARSMPGSCGDCARWLRHTPRHS*
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mRNA from alignment at S-ischiensis_contig9:1843396..1848069+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20603.1 ID=mRNA_S-ischiensis_contig9.20603.1|Name=mRNA_S-ischiensis_contig9.20603.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4674bp|location=Sequence derived from alignment at S-ischiensis_contig9:1843396..1848069+ (Schizocladia ischiensis KU_0333)
TGCTTCGCGCCCTGCAGGCACCCTGGCACATTGCGGGCATTGGGCAAACC
ACGGAGAGCCTGGGTAGGAGGGGCCGGCCCCGCCGGGGGAACGGAGCCAA
GGCATGCTGCACGTGCTGTACCTGCTCTGGTTGAGGGGCTGGTATTGGCG
GGACCTGCCAAGGGACCCCTACGTCTCCTCCTGGCGGTACGGGTGGCGCC
TGATGACGGGCACACTCCCCAGAGACGAGAAGGCCGTCATTGCACAAGTC
GGCGGCGCCGATGCGCAAGTCTCGCACGACGTGGAGGCACCCGCCCAAGC
GTCGGGAGCTGGCGAGTCCGAGAAGAAGGCCGAGGAGGCTGGATTGCTAG
AGATGACCGAAGATGGTGGCCGTACTGGTCGCCACATGCAGGGGGCCGAG
GGGAACGCCCCGGTATCCACAACGGTGGCGAACCAGAACGAACAAGGGCG
TGACGGTGGCGGCGCCGAGAATCCGGGAGATGCCGATGCCAAGACTCATC
TTCAGGTTAGGGCAGTGTCCCAACACCTCACATCCCTCACGCTTCTCGGC
TCCTTCATCGCGGACCTCGACGTGGCCGCAGACTGGCTGTTTGTGACGAC
GGGCTTGGGCGGACAGGGCATGGACCTGACCATCGCAGCCTGGTTTTTTG
CGGCGTTGGGCACTCTCCTGCACCTCCTGATGGTGTGCGAATGCCACGCC
GTCGCAAAAATCGTCAAGAGCTGCGGTGGCGACGTGCGGCCGCGTCACTA
CCCATCGGTGGGGCTGCAGCTGATCGTGGGTCTTTTCTTGGAGGACATAC
CCCAGGTGGCCATCACGGCAGTGGCAGGCTCCGCGCTGACCACGTTCGAA
GGCGGTCTGAACGTGACGACGGCAGCCTTCGCCGCAGTGGCCAAGTTCGC
CGAAGCGTGTGCGACGCGCCGGCAACCATCCCTTCCCGCACAGCTCCAGG
TCGCGAAGACGGACCGTGGGTGCTGGCCTACATGGACGAGCTGGACGAGA
TCGAAGATAAGGTCGAGCAGGCAGCTTGGGCAGCCGACCTTCTCCCGGAG
GTCGAAACTGGGGGCAAGATCAATGCCAGGGTCCTGTGGAGACTGTGCGA
GATGGCTCCGTCACACGCCGAGGCATTCTTGAATGGCCCAGGACCTAGGA
CATCACCAACCTGGAAGTAAATGACTTGATCCTGGAAGTAACGAACCGTG
GATGGAGGCCGTTTCAGCTAACCAAGTCGAGGTTCAACGGTGAGTTAGGT
ACTGTAGCATTCCTACGCAGGCTCCTAGGCCACCCGCTCCGGTGTGTCAA
TGTTTTGTGGGGAGCTCTCGGGAGGATGCTACTCAAGCGTGCCGCCGCCC
CCAACAGCGTCGCACATCGTGCAAAAAATCGGAGACATTTTGCAAACATG
CGTGTTGAATACTGACATGCATCCCCTGGAACTCCATGGAAGAGGAAATC
TGCCTGAGCTGGGCCAGCTCAGCAAGCTGATGACACTGACGCTCTACTAC
AACGGGCTCACGGGTGAGTCAATGTCAATTTCTTGATTTCGCACCGCCAT
TCAACGGAGTGCTCGTACATCACTCAGAACTGTTCAGGCGTGCCTGTATA
GTCACCTCGAAGTACATCGAACTACAGCTTTCTCGCCACACCTTGCTGAC
CGCCATTTGCGGTTAGCGACTGCAGACTTAGCCTCCTGGTGTTGGCCACA
CCATCGTTATGTTGCGTAGACTAATGTTCGTGGTGTCAGCAAGGTGTCTA
GTGCTTGAGATATACAGTAGGGGTCCCACGCGCAATGCACTTGATTGACC
CCTCCCTGCTTGCTCGCAACCTTACACCGGTACGCGAGTGGTGACTCTGC
CTACTCTGCGTCCCTGCCTGTGTCGTTGCCTGCCACAACGCCACACCAGC
ACCTTGCCCTCCCCCCCCCCCCCTCCTCCTACCCCTTCCTCATTCCCCCC
CTCCCACACGCTCCTTCCCTGGCAAGCTAAGTGAGGGCCACTGTTGATGT
CTTTCGTGACGTTGCCCGCACCTCGCCCGTGTTGTTGCTGTCAATACTCT
GTAGCACAGCACAGGCACTGCTATACTCGCCCTGCGTTTTTCCTGTTAAT
GCCAGCGGCGGGACAGACTTTTAGAATTCTGGAATATTCTACTGCAGTGC
ATGCCTCTCTGGAACTTTAACGTGTGCATCTTCCACGAACATTCTGGAAC
ACTCTGGAGCAGGCAACATCCCCAAGGAGCTCGGGCTCCTGACACGCCTG
GAGGTGCTCAACCTGTGCAAGAACCATCTGACTGGTGAGTCTGAACTCGT
GGGAAAAATCAGCTGTGCCGCCGCCCTACCTAGTTGCCTCAGAATGTACT
TGGAGAAGTACATGTCACCCTGCGACTGCCTGCTGACCTTGGTGCTGTAG
CCTGGAAGGTGACATCGAGAGATATCGATTCCACCCGTCAAAATTAGAGA
TATCGATTCACCTGTCAAAATTGCCAGGTTTCTTGCATCTTCGAATGTTC
TCGAGCACAAGTATTGCACAATTGCCTACACAATGTGTCCGGACAGTTAA
CGGGATTGCTGTTCCAACTGGTTGGGACATATACGAAGAAGGCGCCCGTC
GGGCGCAGGTCCCAGAGATTTTACGGCGGGCCCGGTGGGCCCAGACTGGG
GCCGTGCAGCACGCCCGCGGGCCCGTTTCGCGGTGAGCTGGCGTCGCGAT
TTCGACGCGAACTAGCCGGTAACGGCACCCATCGGCCACCTGAAGGTAGG
TACGAGTACTTTGATTGGCGGTCGAGTCAGCCGCTGCTGCTTTGCTGCCC
TGGTGCCAGCATGTTGCCGCTTTGCAACATCGAGTCCATACATTCCAGGT
GAGAACATCTCCTATCGTTCAAGGTGCCATTCCAAAATTCTGGCACGTGT
TGGGTTGGGCACCTCTGGTCACGGTGTATTCTCAGGACGCCGCGTTCACT
TGTTGTGCTCATCCCCTGCCCCGTGCTCTGTGCGCGCAATTACAGAGGAG
ACCGGGAGAGAGCTGAAGACCGCCCTTCCATGCTGCCACATCCGTTACAA
GTATCTTATTCAGGGAAGCGCCACGCCATGGCACTGGCTCTCCCAGCTGT
TCAAACCAGGCCGCTGACTCAATCAAGAACACTCATCAGAATCGCTCGCC
GTGGAGAAGCTTCCGGACGAGCTGCCCCGCGTTGCCCAGGATGGCGGTTG
GCTCACCAGCTGTAACCCTCGCAAGTCCGGGAGAGCTGTGTGCCCGGGGG
AGAAAACCCGTTTGGGTGCTGTGACCCCCCCGCCGCGAGACAAAAGGCTC
ATGCGGCGTCTGCAGCAGCACCGGTATCGTAGCCCAGTGTGTACAGAGAG
TGCCTGATGAACTGCAAGGTAAATTTACGGTGATTCATATACATTGTACT
TCGAAGTAACGAAATTTACGGTATCGGTGGAGGACATTCCTGGAGCAAGC
GTGGCGGCATGGCATTTATTTGAGCATTGACTTTGCTCAATTCTGTGATG
TGGTGGCCAGGTGTTGTACATACTGCGGCTGCCACTCTGTACGCAGGTGC
GGACGGTCCGTTTCGGGGATTGACCTTGACCGAATCTGTAGTGCAGGCAA
GTACACCCCAGACAATATCTTGCCCCAGGTGCTGCAAGACTTGTAACTAC
TGTACTAGTACATGAAGGGGGACAAGTCGGTTGCAGAGTTCCAAGCGCAA
ATAGTCCATTTGTCGCGCTGCGGAGCCACCGCGTCTTCATGAACAGCACT
CGCCCCGAGTCTGCACCACCAGACTGGGGAAGGTTATGCGGGTGGTGACT
CCGGCTACAGTTTGTACCGTAATTTGTACCGTAGTCGTAGTCGTCGGAGA
GACCTTGCAGGCCTTAGAGCTTTTGTGCGCCGTTGCCGTTTTGCCGCAAA
ACCACTTGCTAAAGGCGTTTTCTTCATGAAATTTAGCGGTGTTGCACGCC
GTAGCGGTTTTGCGCCCCCCTCCCATTTTCTACTTTCCAACACACAAGTA
CGAAGTAGTATTTTGCCCCCCGCTGGCCTGGGAAACAAGTAGAACGATTG
GGCCATTTTCGTGTCGATCGTCAAGGTTTTGTTCTGCAGAGCTCTAGGTC
TGCCTCCCCTTTTGTACGTGAGCTCAAACGGCCGTGGGGCAGGGCGCGCG
CTTGCCCCCCTGGATCCACCATCACCGCTTTGAAATACACCCCTCCACGT
GCCCATCCTGCCAGGAGGGTTTTGTGTGTCGGAGGCGTTTTACCCTCTAG
GTTCATCGGCCGGTAGGGGCCTGAGTTTGAATGCGCCTTGGCCAGGGCTG
TTCCCCGGGGGTAGAGCCCAGGGCCGCTGGTACATCATAGTGCCACCAGT
GAGGCCCCTTGGGGTGGATACCACGAGCTTGGCAGTGGGCCTCTCTGGAG
ATAGTTAGCCACGGCCGTTGCGGTATTGGCCAGGCCAAGCCTTGAGCACT
GTGGCGCCGATGTTCAGCATGCCCTCTGTAGAACGTGTTGATGTGCGCTG
TGCTGTCTTGTGTTGATGTGCGCTGTGCTGTCTTGATCATGGCGCCGTCG
CTGTGAAGTGAACGTAGCATCGAGACACATCTGGGCTGAGGTTGCCCTGC
GAGAGCAGTGCTGCACTACTTTCGGCTGGGGGTCACGCATCCACGGCCAC
CAAACACGGAGCACACAGTTGTTT
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1843396..1848069+

>mRNA_S-ischiensis_contig9.20603.1 ID=mRNA_S-ischiensis_contig9.20603.1|Name=mRNA_S-ischiensis_contig9.20603.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2058bp|location=Sequence derived from alignment at S-ischiensis_contig9:1843396..1848069+ (Schizocladia ischiensis KU_0333)
ATGCTGCACGTGCTGTACCTGCTCTGGTTGAGGGGCTGGTATTGGCGGGA
CCTGCCAAGGGACCCCTACGTCTCCTCCTGGCGGTACGGGTGGCGCCTGA
TGACGGGCACACTCCCCAGAGACGAGAAGGCCGTCATTGCACAAGTCGGC
GGCGCCGATGCGCAAGTCTCGCACGACGTGGAGGCACCCGCCCAAGCGTC
GGGAGCTGGCGAGTCCGAGAAGAAGGCCGAGGAGGCTGGATTGCTAGAGA
TGACCGAAGATGGTGGCCGTACTGGTCGCCACATGCAGGGGGCCGAGGGG
AACGCCCCGGTATCCACAACGGTGGCGAACCAGAACGAACAAGGGCGTGA
CGGTGGCGGCGCCGAGAATCCGGGAGATGCCGATGCCAAGACTCATCTTC
AGGTTAGGGCAGTGTCCCAACACCTCACATCCCTCACGCTTCTCGGCTCC
TTCATCGCGGACCTCGACGTGGCCGCAGACTGGCTGTTTGTGACGACGGG
CTTGGGCGGACAGGGCATGGACCTGACCATCGCAGCCTGGTTTTTTGCGG
CGTTGGGCACTCTCCTGCACCTCCTGATGGTGTGCGAATGCCACGCCGTC
GCAAAAATCGTCAAGAGCTGCGGTGGCGACGTGCGGCCGCGTCACTACCC
ATCGGTGGGGCTGCAGCTGATCGTGGGTCTTTTCTTGGAGGACATACCCC
AGGTGGCCATCACGGCAGTGGCAGGCTCCGCGCTGACCACGTTCGAAGGC
GGTCTGAACGTGACGACGGCAGCCTTCGCCGCAGTGGCCAAGTTCGCCGA
AGCGTGTGCGACGCGCCGGCAACCATCCCTTCCCGCACAGCTCCAGGTCG
CGAAGACGGACCGTGGGTGCTGGCCTACATGGACGAGCTGGACGAGATCG
AAGATAAGGTCGAGCAGGCAGCTTGGGCAGCCGACCTTCTCCCGGAGGTC
GAAACTGGGGGCAAGATCAATGCCAGGGTCCTGTGGAGACTGTGCGAGAT
GGCTCCGTCACACGCCGAGGCATTCTTGAATGCTGCACGTGCTGTACCTG
CTCTGGTTGAGGGGCTGGTATTGGCGGGACCTGCCAAGGGACCCCTACGT
CTCCTCCTGGCGGTACGGGTGGCGCCTGATGACGGGCACACTCCCCAGAG
ACGAGAAGGCCGTCATTGCACAAGTCGGCGGCGCCGATGCGCAAGTCTCG
CACGACGTGGAGGCACCCGCCCAAGCGTCGGGAGCTGGCGAGTCCGAGAA
GAAGGCCGAGGAGGCTGGATTGCTAGAGATGACCGAAGATGGTGGCCGTA
CTGGTCGCCACATGCAGGGGGCCGAGGGGAACGCCCCGGTATCCACAACG
GTGGCGAACCAGAACGAACAAGGGCGTGACGGTGGCGGCGCCGAGAATCC
GGGAGATGCCGATGCCAAGACTCATCTTCAGGTTAGGGCAGTGTCCCAAC
ACCTCACATCCCTCACGCTTCTCGGCTCCTTCATCGCGGACCTCGACGTG
GCCGCAGACTGGCTGTTTGTGACGACGGGCTTGGGCGGACAGGGCATGGA
CCTGACCATCGCAGCCTGGTTTTTTGCGGCGTTGGGCACTCTCCTGCACC
TCCTGATGGTGTGCGAATGCCACGCCGTCGCAAAAATCGTCAAGAGCTGC
GGTGGCGACGTGCGGCCGCGTCACTACCCATCGGTGGGGCTGCAGCTGAT
CGTGGGTCTTTTCTTGGAGGACATACCCCAGGTGGCCATCACGGCAGTGG
CAGGCTCCGCGCTGACCACGTTCGAAGGCGGTCTGAACGTGACGACGGCA
GCCTTCGCCGCAGTGGCCAAGTTCGCCGAAGCGTGTGCGACGCGCCGGCA
ACCATCCCTTCCCGCACAGCTCCAGGTCGCGAAGACGGACCGTGGGTGCT
GGCCTACATGGACGAGCTGGACGAGATCGAAGATAAGGTCGAGCAGGCAG
CTTGGGCAGCCGACCTTCTCCCGGAGGTCGAAACTGGGGGCAAGATCAAT
GCCAGGGTCCTGTGGAGACTGTGCGAGATGGCTCCGTCACACGCCGAGGC
ATTCTTGA
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