prot_S-ischiensis_contig9.20506.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig9.20506.1
Unique Nameprot_S-ischiensis_contig9.20506.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length191
Homology
BLAST of mRNA_S-ischiensis_contig9.20506.1 vs. uniprot
Match: D8LSK7_ECTSI (Non-structural maintenance of chromosomes element 1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK7_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 3.020e-37
Identity = 78/193 (40.41%), Postives = 116/193 (60.10%), Query Frame = 0
Query:    6 LNKPLQAFVQQIMANKVVSDAEADKLLKKAFERFAENNSSSNMTVDDAITRANKALHAMQLQIRSTKA--PDGIIYHGLVNKAADEISKHHGAKLLPWQIQLFKSLLSKFGESDDDGTISRSDFEDCKPN-----APQVTAIALSEFLSTLVDEHWLESTDRKN-YRVGVRTYLELPEQLRAHDVHVPQIIYH 190
            L +PLQAF Q +MA KV+S  EA K L  +++RF E       T+D+AI++ +K L +M + +RS KA  P+G+IYH  +NK ADEI+K HG+KL  WQ++ F+ ++ KF +S++   +   D +    +     A       +  F   LVD+ WL        YR+GVRTY+ELPE L+  D+ VPQ+I+H
Sbjct:    4 LREPLQAFAQILMARKVMSQDEAQKALDVSYQRFGE----LAFTLDEAISKVDKMLSSMDMGVRSMKASGPNGLIYHCFINKTADEIAKLHGSKLEDWQVKAFRGMIEKFAKSEEQ-QLELLDLQGLTEHIKTKEAESTKREMIKSFADQLVDDFWLTRPGNDVFYRLGVRTYVELPELLKTFDLEVPQVIHH 191          
BLAST of mRNA_S-ischiensis_contig9.20506.1 vs. uniprot
Match: A0A7S2VZL5_9STRA (Non-structural maintenance of chromosomes element 1 homolog n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2VZL5_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.410e-18
Identity = 52/186 (27.96%), Postives = 97/186 (52.15%), Query Frame = 0
Query:   11 QAFVQQIMANKVVSDAEADKLLKKAFERFAENNSSSNMTVDDAITRANKALHAMQLQIRSTKAPDGIIYHGLVNKAADEISKHHGAKLLPWQIQLFKSLLSKFGESDDD------GTISRSDFEDCKPNAPQVTAIALSEFLSTLVDEHWLESTDRKNYRVGVRTYLELPEQLRAHDVHVPQIIYH 190
            QAF+Q ++A +VVS+ +A  +L+   +R    +   ++  +  + R N+AL  M L++R+   P     H +VN AAD+I++ HG+K+   +I+ F++ +S  GE D +      G ++++D                   +  +V   WL    ++  R+  R++LE+P+ L +H +  PQ IYH
Sbjct:   24 QAFLQMLLAARVVSENKAQSMLEAVRDRMEAGSLPGDL--ETTLKRVNRALKLMDLEVRTMALPQQERVHAVVNLAADDIAEKHGSKMQHNEIRAFRNAISIIGECDGEDKWAALGDLNKAD----------------QAVVEDMVQRGWLAVDSQRRGRIAARSFLEIPDLLESHGIERPQFIYH 191          
BLAST of mRNA_S-ischiensis_contig9.20506.1 vs. uniprot
Match: W7TNJ7_9STRA (Non-structural maintenance of chromosomes element 1 homolog n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNJ7_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 5.160e-14
Identity = 55/187 (29.41%), Postives = 90/187 (48.13%), Query Frame = 0
Query:   11 QAFVQQIMANKVVSDAEADKLLKKAFERFAENNSSSNMTVDDAITRANKALHAMQLQIRSTKAPDGIIYHGLVNKAADEISKHHGAKLLPWQIQLFKSLLS-------KFGESDDDGTISRSDFEDCKPNAPQVTAIALSEFLSTLVDEHWLESTDRKNYRVGVRTYLELPEQLRAHDVHVPQIIYH 190
            QAF+Q +M+ KV++ ++A   L    E     N    + V   +   NK L    LQIR     D   Y  +VN  +D++SK H +K+  W+   FK ++         F E DD+ T  R        +  +  ++     LS L  E WL+      + +G RT+LEL + +RAH++ +PQ++Y+
Sbjct:   17 QAFLQLLMSRKVMTHSQAANALAMISEEL---NVQDQLDVKSCLANLNKELQNCNLQIRGMVHQDSEAY-AVVNVLSDDVSKMHASKMKDWEKAYFKEVIKAICGRGGNFVE-DDELTALRVPIGGTAASVREKRSV-----LSLLSAEFWLQRDKHGRFALGPRTFLELDDFVRAHEMEMPQVLYY 193          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20506.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LSK7_ECTSI3.020e-3740.41Non-structural maintenance of chromosomes element ... [more]
A0A7S2VZL5_9STRA1.410e-1827.96Non-structural maintenance of chromosomes element ... [more]
W7TNJ7_9STRA5.160e-1429.41Non-structural maintenance of chromosomes element ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 89..181
e-value: 1.0E-5
score: 27.4
IPR011513Non-structural maintenance of chromosomes element 1PFAMPF07574SMC_Nse1coord: 11..116
e-value: 9.1E-11
score: 42.0
IPR011513Non-structural maintenance of chromosomes element 1PANTHERPTHR20973NON-SMC ELEMENT 1-RELATEDcoord: 5..184
NoneNo IPR availableGENE3D1.10.10.2370coord: 6..86
e-value: 1.0E-7
score: 33.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:857781..866800 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20506.1mRNA_S-ischiensis_contig9.20506.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig9 857525..866805 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig9.20506.1 ID=prot_S-ischiensis_contig9.20506.1|Name=mRNA_S-ischiensis_contig9.20506.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=191bp
MKVHPLNKPLQAFVQQIMANKVVSDAEADKLLKKAFERFAENNSSSNMTV
DDAITRANKALHAMQLQIRSTKAPDGIIYHGLVNKAADEISKHHGAKLLP
WQIQLFKSLLSKFGESDDDGTISRSDFEDCKPNAPQVTAIALSEFLSTLV
DEHWLESTDRKNYRVGVRTYLELPEQLRAHDVHVPQIIYH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036388WH-like_DNA-bd_sf
IPR011513Nse1