prot_S-ischiensis_contig9.20453.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig9.20453.1
Unique Nameprot_S-ischiensis_contig9.20453.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length93
Homology
BLAST of mRNA_S-ischiensis_contig9.20453.1 vs. uniprot
Match: A0A7I4BAF9_PHYPA (DNA-directed DNA polymerase n=6 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4BAF9_PHYPA)

HSP 1 Score: 77.0 bits (188), Expect = 1.950e-14
Identity = 39/87 (44.83%), Postives = 59/87 (67.82%), Query Frame = 0
Query:    3 GAAKAEELSVKSVVNYGKDWVRRQSRMSAISNQECFQLHGCSGRIILDVLRVLLTSHKMSHFTLQEAASLFLETPLEDIPMAALAAL 89
            G    +   VKSVV YGK W+++Q+RMS+ SNQE F+ +   GR+++D+LRV+L S  +S FTL+E + +FL  P E +  AA++ L
Sbjct:  517 GRRMGQTTEVKSVVTYGKHWIKKQARMSSTSNQEVFRAY-MEGRLVIDMLRVVLVSFNLSTFTLEECSQVFLGAPKEALSTAAVSEL 602          
BLAST of mRNA_S-ischiensis_contig9.20453.1 vs. uniprot
Match: A0A383VUF3_TETOB (DNA-directed DNA polymerase n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VUF3_TETOB)

HSP 1 Score: 69.7 bits (169), Expect = 7.260e-12
Identity = 39/80 (48.75%), Postives = 51/80 (63.75%), Query Frame = 0
Query:   10 LSVKSVVNYGKDWVRRQSRMSAISNQECFQLHGCSGRIILDVLRVLLTSHKMSHFTLQEAASLFLETPLEDIPMAALAAL 89
            LS KSVV Y   WV+ QSRM++ SNQE F+  G  GR++LDVLR +LT+  ++ F+L +     L   LE IP   LAAL
Sbjct:  431 LSTKSVVMYSAAWVKSQSRMASTSNQETFRALGLPGRLVLDVLRQVLTAQGLATFSLVDCCHSLLNRTLEVIPSHTLAAL 510          
BLAST of mRNA_S-ischiensis_contig9.20453.1 vs. uniprot
Match: A0A7J7PSD8_9CHLO (DNA-directed DNA polymerase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PSD8_9CHLO)

HSP 1 Score: 69.3 bits (168), Expect = 9.900e-12
Identity = 39/80 (48.75%), Postives = 50/80 (62.50%), Query Frame = 0
Query:   10 LSVKSVVNYGKDWVRRQSRMSAISNQECFQLHGCSGRIILDVLRVLLTSHKMSHFTLQEAASLFLETPLEDIPMAALAAL 89
            LS KSVV Y   WV+ QSRM++ SNQE F+  G  GR++LDVLR +LT   ++ F+L +     L   LE IP   LAAL
Sbjct:  393 LSTKSVVMYSAAWVKSQSRMASTSNQETFRALGLPGRLVLDVLRQVLTGQGLATFSLVDCCHSLLNRTLEVIPSHTLAAL 472          
BLAST of mRNA_S-ischiensis_contig9.20453.1 vs. uniprot
Match: A0A1Y1HM97_KLENI (DNA-directed DNA polymerase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HM97_KLENI)

HSP 1 Score: 67.8 bits (164), Expect = 3.450e-11
Identity = 36/80 (45.00%), Postives = 53/80 (66.25%), Query Frame = 0
Query:   10 LSVKSVVNYGKDWVRRQSRMSAISNQECFQLHGCSGRIILDVLRVLLTSHKMSHFTLQEAASLFLETPLEDIPMAALAAL 89
            L VKSVV+YGK+WV+ Q RM+A SN E ++     GR+++D+LR +  +H +S FTL E + +FL    E +  AA+ AL
Sbjct:  594 LEVKSVVSYGKNWVKNQQRMTATSNLETYRAT-VEGRVVVDMLRSITIAHNLSTFTLAECSQVFLGETKEVLSAAAITAL 672          
BLAST of mRNA_S-ischiensis_contig9.20453.1 vs. uniprot
Match: A0A8J4ALR4_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4ALR4_9CHLO)

HSP 1 Score: 67.0 bits (162), Expect = 6.180e-11
Identity = 39/79 (49.37%), Postives = 50/79 (63.29%), Query Frame = 0
Query:    1 GGGAAKAEELSVKSVVNYGKDWVRRQSRMSAISNQECFQLHGCSGRIILDVLRVLLTSHKMSHFTLQEAASLFLETPLE 79
            GG AA A  L+VKSVV Y   WV+RQ RMS+ SNQE FQ     GR+++DVLR +LTS  ++ F+L +     L   LE
Sbjct:  502 GGPAAAASPLTVKSVVMYSVAWVKRQGRMSSNSNQETFQAD-IRGRVVVDVLRQVLTSQTLATFSLVDCCQSLLGETLE 579          
BLAST of mRNA_S-ischiensis_contig9.20453.1 vs. uniprot
Match: D8U613_VOLCA (DNA-directed DNA polymerase n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U613_VOLCA)

HSP 1 Score: 67.0 bits (162), Expect = 6.300e-11
Identity = 37/78 (47.44%), Postives = 49/78 (62.82%), Query Frame = 0
Query:    2 GGAAKAEELSVKSVVNYGKDWVRRQSRMSAISNQECFQLHGCSGRIILDVLRVLLTSHKMSHFTLQEAASLFLETPLE 79
            GGA  A  L+VK+VV Y   WV+RQ RMS+ SNQE FQ     GR+++DVLR +LTS  ++ F+L +     L   LE
Sbjct:  271 GGAVAASPLTVKTVVMYSAAWVKRQGRMSSNSNQETFQAE-VRGRVVVDVLRQVLTSQSLATFSLVDCCQTLLGETLE 347          
BLAST of mRNA_S-ischiensis_contig9.20453.1 vs. uniprot
Match: A0A2K3DZJ0_CHLRE (DNA-directed DNA polymerase n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DZJ0_CHLRE)

HSP 1 Score: 65.5 bits (158), Expect = 2.240e-10
Identity = 33/70 (47.14%), Postives = 47/70 (67.14%), Query Frame = 0
Query:   10 LSVKSVVNYGKDWVRRQSRMSAISNQECFQLHGCSGRIILDVLRVLLTSHKMSHFTLQEAASLFLETPLE 79
            L+V+SVV Y  DWVR+Q RM++ SNQE F+   C GR+ +DVLR ++ S  +  F+L + A   L+T LE
Sbjct:  716 LTVRSVVTYSPDWVRKQGRMTSTSNQETFRADVC-GRVCVDVLRQVVASQSLCSFSLVDCAQSLLDTTLE 784          
BLAST of mRNA_S-ischiensis_contig9.20453.1 vs. uniprot
Match: A0A8J4C0T4_9CHLO (DNA-directed DNA polymerase n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4C0T4_9CHLO)

HSP 1 Score: 65.1 bits (157), Expect = 2.990e-10
Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = 0
Query:    1 GGGAAKAEELSVKSVVNYGKDWVRRQSRMSAISNQECFQLHGCSGRIILDVLRVLLTSHKMSHFTLQEAASLFLETPLE 79
            GG AA A  ++V+SVV Y   WV+RQ RMS+ SNQE FQ     GR+++DVLR +LTS  ++ F+L +     L   LE
Sbjct:   55 GGTAATASPMTVRSVVMYSVAWVKRQGRMSSNSNQETFQAD-IRGRVVVDVLRQVLTSQTLATFSLVDCCQSLLGETLE 132          
BLAST of mRNA_S-ischiensis_contig9.20453.1 vs. uniprot
Match: A0A8J4DAF1_9CHLO (DNA-directed DNA polymerase n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4DAF1_9CHLO)

HSP 1 Score: 65.1 bits (157), Expect = 3.040e-10
Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = 0
Query:    1 GGGAAKAEELSVKSVVNYGKDWVRRQSRMSAISNQECFQLHGCSGRIILDVLRVLLTSHKMSHFTLQEAASLFLETPLE 79
            GG AA A  ++V+SVV Y   WV+RQ RMS+ SNQE FQ     GR+++DVLR +LTS  ++ F+L +     L   LE
Sbjct:  510 GGTAATASPMTVRSVVMYSVAWVKRQGRMSSNSNQETFQAD-IRGRVVVDVLRQVLTSQTLATFSLVDCCQSLLGETLE 587          
BLAST of mRNA_S-ischiensis_contig9.20453.1 vs. uniprot
Match: A0A835Y767_9CHLO (DNA-directed DNA polymerase n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y767_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 1.150e-7
Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 0
Query:    2 GGAAKAEELSVKSVVNYGKDWVRRQSRMSAISNQECFQLHGCSGRIILDVLRVLLTSHKMSHFTLQEAASLFLETPLE 79
            GG  +   L   SVV Y   WVR+Q RM+A SNQE ++     GR+++DVLR +LTS  ++ F+L +     L   LE
Sbjct:  542 GGGLRLSRLGGGSVVAYSPAWVRKQGRMAATSNQETYRAD-IRGRVVVDVLRQILTSQSLATFSLVDCCQSLLGETLE 618          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20453.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A7I4BAF9_PHYPA1.950e-1444.83DNA-directed DNA polymerase n=6 Tax=Physcomitrium ... [more]
A0A383VUF3_TETOB7.260e-1248.75DNA-directed DNA polymerase n=1 Tax=Tetradesmus ob... [more]
A0A7J7PSD8_9CHLO9.900e-1248.75DNA-directed DNA polymerase n=1 Tax=Scenedesmus sp... [more]
A0A1Y1HM97_KLENI3.450e-1145.00DNA-directed DNA polymerase n=1 Tax=Klebsormidium ... [more]
A0A8J4ALR4_9CHLO6.180e-1149.37Uncharacterized protein (Fragment) n=1 Tax=Volvox ... [more]
D8U613_VOLCA6.300e-1147.44DNA-directed DNA polymerase n=1 Tax=Volvox carteri... [more]
A0A2K3DZJ0_CHLRE2.240e-1047.14DNA-directed DNA polymerase n=1 Tax=Chlamydomonas ... [more]
A0A8J4C0T4_9CHLO2.990e-1046.84DNA-directed DNA polymerase n=1 Tax=Volvox reticul... [more]
A0A8J4DAF1_9CHLO3.040e-1046.84DNA-directed DNA polymerase n=2 Tax=Volvox reticul... [more]
A0A835Y767_9CHLO1.150e-741.03DNA-directed DNA polymerase n=1 Tax=Edaphochlamys ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 4..92
e-value: 8.0E-6
score: 27.3
NoneNo IPR availablePANTHERPTHR10322:SF35coord: 9..88
NoneNo IPR availablePANTHERPTHR10322DNA POLYMERASE CATALYTIC SUBUNITcoord: 9..88

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:523472..523997 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20453.1mRNA_S-ischiensis_contig9.20453.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig9 523472..523997 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig9.20453.1 ID=prot_S-ischiensis_contig9.20453.1|Name=mRNA_S-ischiensis_contig9.20453.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=93bp
GGGAAKAEELSVKSVVNYGKDWVRRQSRMSAISNQECFQLHGCSGRIILD
VLRVLLTSHKMSHFTLQEAASLFLETPLEDIPMAALAALCACA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf