mRNA_S-ischiensis_contig9.20453.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20453.1
Unique NamemRNA_S-ischiensis_contig9.20453.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig9.20453.1 vs. uniprot
Match: A0A7I4BAF9_PHYPA (DNA-directed DNA polymerase n=6 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4BAF9_PHYPA)

HSP 1 Score: 77.0 bits (188), Expect = 1.950e-14
Identity = 39/87 (44.83%), Postives = 59/87 (67.82%), Query Frame = 1
Query:    7 GAAKAEELSVKSVVNYGKDWVRRQSRMSAISNQECFQLHGCSGRIILDVLRVLLTSHKMSHFTLQEAASLFLETPLEDIPMAALAAL 267
            G    +   VKSVV YGK W+++Q+RMS+ SNQE F+ +   GR+++D+LRV+L S  +S FTL+E + +FL  P E +  AA++ L
Sbjct:  517 GRRMGQTTEVKSVVTYGKHWIKKQARMSSTSNQEVFRAY-MEGRLVIDMLRVVLVSFNLSTFTLEECSQVFLGAPKEALSTAAVSEL 602          
BLAST of mRNA_S-ischiensis_contig9.20453.1 vs. uniprot
Match: A0A383VUF3_TETOB (DNA-directed DNA polymerase n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VUF3_TETOB)

HSP 1 Score: 69.7 bits (169), Expect = 7.260e-12
Identity = 39/80 (48.75%), Postives = 51/80 (63.75%), Query Frame = 1
Query:   28 LSVKSVVNYGKDWVRRQSRMSAISNQECFQLHGCSGRIILDVLRVLLTSHKMSHFTLQEAASLFLETPLEDIPMAALAAL 267
            LS KSVV Y   WV+ QSRM++ SNQE F+  G  GR++LDVLR +LT+  ++ F+L +     L   LE IP   LAAL
Sbjct:  431 LSTKSVVMYSAAWVKSQSRMASTSNQETFRALGLPGRLVLDVLRQVLTAQGLATFSLVDCCHSLLNRTLEVIPSHTLAAL 510          
BLAST of mRNA_S-ischiensis_contig9.20453.1 vs. uniprot
Match: A0A7J7PSD8_9CHLO (DNA-directed DNA polymerase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PSD8_9CHLO)

HSP 1 Score: 69.3 bits (168), Expect = 9.900e-12
Identity = 39/80 (48.75%), Postives = 50/80 (62.50%), Query Frame = 1
Query:   28 LSVKSVVNYGKDWVRRQSRMSAISNQECFQLHGCSGRIILDVLRVLLTSHKMSHFTLQEAASLFLETPLEDIPMAALAAL 267
            LS KSVV Y   WV+ QSRM++ SNQE F+  G  GR++LDVLR +LT   ++ F+L +     L   LE IP   LAAL
Sbjct:  393 LSTKSVVMYSAAWVKSQSRMASTSNQETFRALGLPGRLVLDVLRQVLTGQGLATFSLVDCCHSLLNRTLEVIPSHTLAAL 472          
BLAST of mRNA_S-ischiensis_contig9.20453.1 vs. uniprot
Match: A0A1Y1HM97_KLENI (DNA-directed DNA polymerase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HM97_KLENI)

HSP 1 Score: 67.8 bits (164), Expect = 3.450e-11
Identity = 36/80 (45.00%), Postives = 53/80 (66.25%), Query Frame = 1
Query:   28 LSVKSVVNYGKDWVRRQSRMSAISNQECFQLHGCSGRIILDVLRVLLTSHKMSHFTLQEAASLFLETPLEDIPMAALAAL 267
            L VKSVV+YGK+WV+ Q RM+A SN E ++     GR+++D+LR +  +H +S FTL E + +FL    E +  AA+ AL
Sbjct:  594 LEVKSVVSYGKNWVKNQQRMTATSNLETYRAT-VEGRVVVDMLRSITIAHNLSTFTLAECSQVFLGETKEVLSAAAITAL 672          
BLAST of mRNA_S-ischiensis_contig9.20453.1 vs. uniprot
Match: A0A8J4ALR4_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4ALR4_9CHLO)

HSP 1 Score: 67.0 bits (162), Expect = 6.180e-11
Identity = 39/79 (49.37%), Postives = 50/79 (63.29%), Query Frame = 1
Query:    1 GGGAAKAEELSVKSVVNYGKDWVRRQSRMSAISNQECFQLHGCSGRIILDVLRVLLTSHKMSHFTLQEAASLFLETPLE 237
            GG AA A  L+VKSVV Y   WV+RQ RMS+ SNQE FQ     GR+++DVLR +LTS  ++ F+L +     L   LE
Sbjct:  502 GGPAAAASPLTVKSVVMYSVAWVKRQGRMSSNSNQETFQAD-IRGRVVVDVLRQVLTSQTLATFSLVDCCQSLLGETLE 579          
BLAST of mRNA_S-ischiensis_contig9.20453.1 vs. uniprot
Match: D8U613_VOLCA (DNA-directed DNA polymerase n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U613_VOLCA)

HSP 1 Score: 67.0 bits (162), Expect = 6.300e-11
Identity = 37/78 (47.44%), Postives = 49/78 (62.82%), Query Frame = 1
Query:    4 GGAAKAEELSVKSVVNYGKDWVRRQSRMSAISNQECFQLHGCSGRIILDVLRVLLTSHKMSHFTLQEAASLFLETPLE 237
            GGA  A  L+VK+VV Y   WV+RQ RMS+ SNQE FQ     GR+++DVLR +LTS  ++ F+L +     L   LE
Sbjct:  271 GGAVAASPLTVKTVVMYSAAWVKRQGRMSSNSNQETFQAE-VRGRVVVDVLRQVLTSQSLATFSLVDCCQTLLGETLE 347          
BLAST of mRNA_S-ischiensis_contig9.20453.1 vs. uniprot
Match: A0A2K3DZJ0_CHLRE (DNA-directed DNA polymerase n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DZJ0_CHLRE)

HSP 1 Score: 65.5 bits (158), Expect = 2.240e-10
Identity = 33/70 (47.14%), Postives = 47/70 (67.14%), Query Frame = 1
Query:   28 LSVKSVVNYGKDWVRRQSRMSAISNQECFQLHGCSGRIILDVLRVLLTSHKMSHFTLQEAASLFLETPLE 237
            L+V+SVV Y  DWVR+Q RM++ SNQE F+   C GR+ +DVLR ++ S  +  F+L + A   L+T LE
Sbjct:  716 LTVRSVVTYSPDWVRKQGRMTSTSNQETFRADVC-GRVCVDVLRQVVASQSLCSFSLVDCAQSLLDTTLE 784          
BLAST of mRNA_S-ischiensis_contig9.20453.1 vs. uniprot
Match: A0A8J4C0T4_9CHLO (DNA-directed DNA polymerase n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4C0T4_9CHLO)

HSP 1 Score: 65.1 bits (157), Expect = 2.990e-10
Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = 1
Query:    1 GGGAAKAEELSVKSVVNYGKDWVRRQSRMSAISNQECFQLHGCSGRIILDVLRVLLTSHKMSHFTLQEAASLFLETPLE 237
            GG AA A  ++V+SVV Y   WV+RQ RMS+ SNQE FQ     GR+++DVLR +LTS  ++ F+L +     L   LE
Sbjct:   55 GGTAATASPMTVRSVVMYSVAWVKRQGRMSSNSNQETFQAD-IRGRVVVDVLRQVLTSQTLATFSLVDCCQSLLGETLE 132          
BLAST of mRNA_S-ischiensis_contig9.20453.1 vs. uniprot
Match: A0A8J4DAF1_9CHLO (DNA-directed DNA polymerase n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4DAF1_9CHLO)

HSP 1 Score: 65.1 bits (157), Expect = 3.040e-10
Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = 1
Query:    1 GGGAAKAEELSVKSVVNYGKDWVRRQSRMSAISNQECFQLHGCSGRIILDVLRVLLTSHKMSHFTLQEAASLFLETPLE 237
            GG AA A  ++V+SVV Y   WV+RQ RMS+ SNQE FQ     GR+++DVLR +LTS  ++ F+L +     L   LE
Sbjct:  510 GGTAATASPMTVRSVVMYSVAWVKRQGRMSSNSNQETFQAD-IRGRVVVDVLRQVLTSQTLATFSLVDCCQSLLGETLE 587          
BLAST of mRNA_S-ischiensis_contig9.20453.1 vs. uniprot
Match: A0A835Y767_9CHLO (DNA-directed DNA polymerase n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y767_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 1.150e-7
Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 1
Query:    4 GGAAKAEELSVKSVVNYGKDWVRRQSRMSAISNQECFQLHGCSGRIILDVLRVLLTSHKMSHFTLQEAASLFLETPLE 237
            GG  +   L   SVV Y   WVR+Q RM+A SNQE ++     GR+++DVLR +LTS  ++ F+L +     L   LE
Sbjct:  542 GGGLRLSRLGGGSVVAYSPAWVRKQGRMAATSNQETYRAD-IRGRVVVDVLRQILTSQSLATFSLVDCCQSLLGETLE 618          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A7I4BAF9_PHYPA1.950e-1444.83DNA-directed DNA polymerase n=6 Tax=Physcomitrium ... [more]
A0A383VUF3_TETOB7.260e-1248.75DNA-directed DNA polymerase n=1 Tax=Tetradesmus ob... [more]
A0A7J7PSD8_9CHLO9.900e-1248.75DNA-directed DNA polymerase n=1 Tax=Scenedesmus sp... [more]
A0A1Y1HM97_KLENI3.450e-1145.00DNA-directed DNA polymerase n=1 Tax=Klebsormidium ... [more]
A0A8J4ALR4_9CHLO6.180e-1149.37Uncharacterized protein (Fragment) n=1 Tax=Volvox ... [more]
D8U613_VOLCA6.300e-1147.44DNA-directed DNA polymerase n=1 Tax=Volvox carteri... [more]
A0A2K3DZJ0_CHLRE2.240e-1047.14DNA-directed DNA polymerase n=1 Tax=Chlamydomonas ... [more]
A0A8J4C0T4_9CHLO2.990e-1046.84DNA-directed DNA polymerase n=1 Tax=Volvox reticul... [more]
A0A8J4DAF1_9CHLO3.040e-1046.84DNA-directed DNA polymerase n=2 Tax=Volvox reticul... [more]
A0A835Y767_9CHLO1.150e-741.03DNA-directed DNA polymerase n=1 Tax=Edaphochlamys ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:523472..523997 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score77.0
Seed ortholog evalue5.1e-12
Seed eggNOG ortholog3218.PP1S65_111V6.1
KEGG rclassRC02795
KEGG koko:K02327
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03430,ko03440,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map03430,map03440,map05166
KEGG ModuleM00262
EggNOG free text desc.DNA polymerase
EggNOG OGs37IAH@33090,3GDH4@35493,COG0417@1,KOG0969@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817378.548571-CDS-S-ischiensis_contig9:523471..5236191622817378.548571-CDS-S-ischiensis_contig9:523471..523619Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 523472..523619 -
1695741068.0710027-CDS-S-ischiensis_contig9:523471..5236191695741068.0710027-CDS-S-ischiensis_contig9:523471..523619Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 523472..523619 -
1622817378.5596867-CDS-S-ischiensis_contig9:523866..5239971622817378.5596867-CDS-S-ischiensis_contig9:523866..523997Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 523867..523997 -
1695741068.0867732-CDS-S-ischiensis_contig9:523866..5239971695741068.0867732-CDS-S-ischiensis_contig9:523866..523997Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 523867..523997 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20453.1prot_S-ischiensis_contig9.20453.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 523472..523997 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20453.1

>prot_S-ischiensis_contig9.20453.1 ID=prot_S-ischiensis_contig9.20453.1|Name=mRNA_S-ischiensis_contig9.20453.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=93bp
GGGAAKAEELSVKSVVNYGKDWVRRQSRMSAISNQECFQLHGCSGRIILD
VLRVLLTSHKMSHFTLQEAASLFLETPLEDIPMAALAALCACA
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mRNA from alignment at S-ischiensis_contig9:523472..523997-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20453.1 ID=mRNA_S-ischiensis_contig9.20453.1|Name=mRNA_S-ischiensis_contig9.20453.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=526bp|location=Sequence derived from alignment at S-ischiensis_contig9:523472..523997- (Schizocladia ischiensis KU_0333)
GGCGGCGGGGCAGCCAAGGCCGAAGAGCTGTCTGTGAAGAGCGTGGTGAA CTACGGCAAGGACTGGGTGCGCCGGCAATCGCGCATGAGCGCCATCAGCA ACCAGGAGTGCTTCCAGCTGCACGGGTGCAGGTGATGAGAGCGGGGAGGA GGAAGGGTTGGGAGAGGAGAGGAGGAGGACCGAGCGAGGACCTGTTGCAG TACCAGGCTGCTCGCTCGCCAATCGATCGGCCGCGCGAGACCAACCGGCC ACCGTGTCATACCTAATCACCTCTACAATCCGCTCCCCTCCTTGCTCTTC TCCCCCCCCCCCGCCCCGCCCCACTCCCTGTCCCCTCCCTCCCCTCGCTC CCTTCCCTCCGTCCCTGTCCCCACACAGCGGGCGCATCATCCTGGACGTG CTCCGCGTGCTCCTCACCTCCCACAAGATGTCTCACTTCACCCTACAAGA GGCCGCCTCCCTATTCCTGGAAACCCCGCTGGAGGACATACCCATGGCTG CCCTCGCCGCCCTGTGCGCCTGCGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:523472..523997-

>mRNA_S-ischiensis_contig9.20453.1 ID=mRNA_S-ischiensis_contig9.20453.1|Name=mRNA_S-ischiensis_contig9.20453.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=558bp|location=Sequence derived from alignment at S-ischiensis_contig9:523472..523997- (Schizocladia ischiensis KU_0333)
GGCGGCGGGGCAGCCAAGGCCGAAGAGCTGTCTGTGAAGAGCGTGGTGAA
CTACGGCAAGGACTGGGTGCGCCGGCAATCGCGCATGAGCGCCATCAGCA
ACCAGGAGTGCTTCCAGCTGCACGGGTGCAGGGCGGCGGGGCAGCCAAGG
CCGAAGAGCTGTCTGTGAAGAGCGTGGTGAACTACGGCAAGGACTGGGTG
CGCCGGCAATCGCGCATGAGCGCCATCAGCAACCAGGAGTGCTTCCAGCT
GCACGGGTGCAGCGGGCGCATCATCCTGGACGTGCTCCGCGTGCTCCTCA
CCTCCCACAAGATGTCTCACTTCACCCTACAAGAGGCCGCCTCCCTATTC
CTGGAAACCCCGCTGGAGGACATACCCATGGCTGCCCTCGCCGCCCTGTG
CGCCTGCGCCCGGGCGCATCATCCTGGACGTGCTCCGCGTGCTCCTCACC
TCCCACAAGATGTCTCACTTCACCCTACAAGAGGCCGCCTCCCTATTCCT
GGAAACCCCGCTGGAGGACATACCCATGGCTGCCCTCGCCGCCCTGTGCG
CCTGCGCC
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