prot_S-ischiensis_contig9.20389.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig9.20389.1
Unique Nameprot_S-ischiensis_contig9.20389.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length363
Homology
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BLAST of mRNA_S-ischiensis_contig9.20389.1 vs. uniprot
Match: D8LN43_ECTSI (DIS3-like exonuclease 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN43_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 1.290e-26
Identity = 112/363 (30.85%), Postives = 144/363 (39.67%), Query Frame = 0 
Query:   42 LRVREQYLRTDGFFFPMSSTVLGSAADASDPGSGTTAVAA------------TYVCPDSAALHCYLDLFQHPAFAACFGGGQAGGRGACNLVL--------------------------------VQTALEKLTGAPGAMSRDEERRLMQLARSLPGTLVFLDKFCPETYLAAKDHVGVAGGGGSAPGSGASAELQALAVAAAWCQERLSQSPRGEGLLEGPQLTELVILSDDAALAPPADTGGPNL-HWLDCQTFIERFCAPAALEEVERRRGLLRSVYLARGAGSAVRGGGAEDSQHPPALPGVGEGPTGWVSGVGWAPHPSLADLEEGLARGKYLRGTLEVSEHNPREGLVGVSVGGKAS 359
            +R+RE YLR D     M  T+LG        G    A               +YVCP +  LHCYL+LF  P F+ACF   + GG G                                      + + L KLTGA GA+S  +ERRL QLARSLPGT+VF DKFCP+ + A+      AG    A   G  +  +ALAV              G   + G                  A  GG  L   L  + F+  +    A EE+ RR  LLR  +L+  A +                       T   S     PHPS   LE  +A G   +G L+V EHNP+EG+V V  GG A+
Sbjct:    4 MRIRETYLRGDRLLVSMKDTLLGEGGGEEGEGCSFQATGGGEDSRKHNKRRCSYVCPTADFLHCYLELFDRPNFSACF--QRDGGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHSELSKLTGATGALSMKQERRLSQLARSLPGTMVFFDKFCPDLHGAS------AGATAGATDPGERSPSEALAVG-------------GHARMGG---------------TGAAGGGGAGLPRVLGLREFLRGYVGGDAEEELARRGDLLRRAHLSCKAATXXXXXXXXXXXTG----------TATTSSPLQKPHPSKTQLEALVASGAASKGRLDVFEHNPKEGVVVVGAGGGAA 320
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20389.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LN43_ECTSI1.290e-2630.85DIS3-like exonuclease 1 n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.1010coord: 33..262
e-value: 2.4E-5
score: 25.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:168747..173689 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20389.1mRNA_S-ischiensis_contig9.20389.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig9 168724..173689 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig9.20389.1 ID=prot_S-ischiensis_contig9.20389.1|Name=mRNA_S-ischiensis_contig9.20389.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=363bp
MSGSFCEGSGAGAVLEPALHCTFAVHSRKGGAKRKTGGAAGLRVREQYLR
TDGFFFPMSSTVLGSAADASDPGSGTTAVAATYVCPDSAALHCYLDLFQH
PAFAACFGGGQAGGRGACNLVLVQTALEKLTGAPGAMSRDEERRLMQLAR
SLPGTLVFLDKFCPETYLAAKDHVGVAGGGGSAPGSGASAELQALAVAAA
WCQERLSQSPRGEGLLEGPQLTELVILSDDAALAPPADTGGPNLHWLDCQ
TFIERFCAPAALEEVERRRGLLRSVYLARGAGSAVRGGGAEDSQHPPALP
GVGEGPTGWVSGVGWAPHPSLADLEEGLARGKYLRGTLEVSEHNPREGLV
GVSVGGKASGAAA
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