prot_S-ischiensis_contig9.20379.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig9.20379.1
Unique Nameprot_S-ischiensis_contig9.20379.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length177
Homology
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BLAST of mRNA_S-ischiensis_contig9.20379.1 vs. uniprot
Match: A0A6H5KD90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD90_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.810e-7
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 0 
Query:   10 DGLRTTISGKLYRCPPVFSESSETVFCACSSAIQGRSVDTGEE 52
            D  R  +SG L+RC PVFS SS+TVFCACSS++ G SV+TGE+
Sbjct:   69 DETRAVLSGCLFRCSPVFSPSSDTVFCACSSSVLGVSVETGEQ 111
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BLAST of mRNA_S-ischiensis_contig9.20379.1 vs. uniprot
Match: D7G8M6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8M6_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 7.000e-7
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 0 
Query:   13 RTTISGKLYRCPPVFSESSETVFCACSSAIQGRSVDTGEE 52
            R  +SG L+RC PVFS SS+ VFCACSS++ G SV+TGE+
Sbjct:   36 RAVLSGSLFRCSPVFSPSSDAVFCACSSSVLGVSVETGEQ 75
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20379.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KD90_9PHAE1.810e-762.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8M6_ECTSI7.000e-762.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 49..105
e-value: 5.5E-6
score: 35.9
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 92..107
score: 9.005
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 26..109
e-value: 6.9E-8
score: 34.0
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 92..106
IPR011047Quinoprotein alcohol dehydrogenase-like superfamilySUPERFAMILY50998Quinoprotein alcohol dehydrogenase-likecoord: 23..106

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:24337..26129 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20379.1mRNA_S-ischiensis_contig9.20379.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig9 24292..26191 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig9.20379.1 ID=prot_S-ischiensis_contig9.20379.1|Name=mRNA_S-ischiensis_contig9.20379.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=177bp
MAGTLGNSMDGLRTTISGKLYRCPPVFSESSETVFCACSSAIQGRSVDTG
EERFRLLGHSKDVTAMIFLPGATASGGREEGTQRAKDSRDRLASAAMDGT
LRVWDVSVVLGVPEVGLPFNCGRFGWRQWGEGGCGRKPLPVCLGNGAANP
CHVPGSRRQRCGQCNSGSAPGDHRPQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR011047Quinoprotein_ADH-like_supfam