prot_S-ischiensis_contig84.20094.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig84.20094.1
Unique Nameprot_S-ischiensis_contig84.20094.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length122
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig84.20094.1 vs. uniprot
Match: A0A6H5KKF1_9PHAE (VPS13 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF1_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 3.430e-5
Identity = 22/40 (55.00%), Postives = 35/40 (87.50%), Query Frame = 0 
Query:   21 VASLQASGLSFSLLRLTYDQRVTATADTLLLRDSAGVKVL 60
            +A+++ASGL+ +L RLTYD R+TATA+ +++RDS G++VL
Sbjct: 1663 IAAVEASGLTLALTRLTYDTRLTATAEAIIVRDSDGIRVL 1702
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig84.20094.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KKF1_9PHAE3.430e-555.00VPS13 domain-containing protein n=1 Tax=Ectocarpus... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig84contigS-ischiensis_contig84:654564..655225 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig84.20094.1mRNA_S-ischiensis_contig84.20094.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig84 654564..655226 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig84.20094.1 ID=prot_S-ischiensis_contig84.20094.1|Name=mRNA_S-ischiensis_contig84.20094.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=122bp
GRAGERAVTQLEVLGGAYDYVASLQASGLSFSLLRLTYDQRVTATADTLL
LRDSAGVKVLHIRPSSASPPPGTVPSASASSSSSSAAAAAAATAATGTSS
ARPPPSNAASAGLDARRRGSSA
back to top