mRNA_S-ischiensis_contig84.20094.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig84.20094.1
Unique NamemRNA_S-ischiensis_contig84.20094.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig84.20094.1 vs. uniprot
Match: A0A6H5KKF1_9PHAE (VPS13 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF1_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 3.430e-5
Identity = 22/40 (55.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   61 VASLQASGLSFSLLRLTYDQRVTATADTLLLRDSAGVKVL 180
            +A+++ASGL+ +L RLTYD R+TATA+ +++RDS G++VL
Sbjct: 1663 IAAVEASGLTLALTRLTYDTRLTATAEAIIVRDSDGIRVL 1702
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig84.20094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KKF1_9PHAE3.430e-555.00VPS13 domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig84contigS-ischiensis_contig84:654564..655226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size367
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817333.5645149-CDS-S-ischiensis_contig84:654563..6546381622817333.5645149-CDS-S-ischiensis_contig84:654563..654638Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 654564..654638 +
1695741034.9185677-CDS-S-ischiensis_contig84:654563..6546381695741034.9185677-CDS-S-ischiensis_contig84:654563..654638Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 654564..654638 +
1622817333.575878-CDS-S-ischiensis_contig84:654934..6552251622817333.575878-CDS-S-ischiensis_contig84:654934..655225Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 654935..655225 +
1695741034.9370272-CDS-S-ischiensis_contig84:654934..6552251695741034.9370272-CDS-S-ischiensis_contig84:654934..655225Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 654935..655225 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig84.20094.1prot_S-ischiensis_contig84.20094.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig84 654564..655225 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig84.20094.1

>prot_S-ischiensis_contig84.20094.1 ID=prot_S-ischiensis_contig84.20094.1|Name=mRNA_S-ischiensis_contig84.20094.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=122bp
GRAGERAVTQLEVLGGAYDYVASLQASGLSFSLLRLTYDQRVTATADTLL
LRDSAGVKVLHIRPSSASPPPGTVPSASASSSSSSAAAAAAATAATGTSS
ARPPPSNAASAGLDARRRGSSA
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mRNA from alignment at S-ischiensis_contig84:654564..655226+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig84.20094.1 ID=mRNA_S-ischiensis_contig84.20094.1|Name=mRNA_S-ischiensis_contig84.20094.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=663bp|location=Sequence derived from alignment at S-ischiensis_contig84:654564..655226+ (Schizocladia ischiensis KU_0333)
GGGAGGGCCGGGGAGCGGGCGGTGACGCAGCTCGAGGTTCTGGGCGGGGC
GTACGACTACGTTGCTAGCCTGCAGGTGAAGTGGGATGTTGCTACCTGTT
CAGGGGCGGTGATGGGATATCTAAGCAAATCGACCTATTTATCGACAGTA
CTGATCTGCTCCGTCTCGACCGAGGCGCGTGGTCAATATTCTCGGGACTA
CAGCAAGCACCACGTGAGTACATATATACTTCTAGTATATACGAAGTACT
TATCTATACTTCGAAGTACATCTATCGATAGTCGATATTCGATAGTTTGA
TGGCAACTCGTGGATAACCCCCCCCCCCCCCCCCCCCCTCCTCCTCCGCC
GCCGCACATTCCCTTGGACAGGCGTCCGGGCTGAGCTTCTCCCTCCTGCG
GCTCACCTACGACCAGCGGGTGACCGCCACCGCAGATACCCTCCTCCTCC
GAGACTCGGCCGGGGTCAAGGTGCTCCACATCAGGCCCTCCTCTGCTTCC
CCCCCACCAGGCACCGTGCCGTCTGCCTCCGCCTCCTCCTCCTCGTCTTC
CGCGGCGGCGGCGGCTGCGGCTACGGCGGCGACGGGGACCTCGTCCGCTC
GCCCACCCCCTTCTAACGCCGCCAGTGCAGGCCTCGATGCCAGGCGCAGG
GGCAGTAGTGCTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig84:654564..655226+

>mRNA_S-ischiensis_contig84.20094.1 ID=mRNA_S-ischiensis_contig84.20094.1|Name=mRNA_S-ischiensis_contig84.20094.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=732bp|location=Sequence derived from alignment at S-ischiensis_contig84:654564..655226+ (Schizocladia ischiensis KU_0333)
GGGAGGGCCGGGGAGCGGGCGGTGACGCAGCTCGAGGTTCTGGGCGGGGC
GTACGACTACGTTGCTAGCCTGCAGGGGAGGGCCGGGGAGCGGGCGGTGA
CGCAGCTCGAGGTTCTGGGCGGGGCGTACGACTACGTTGCTAGCCTGCAG
GCGTCCGGGCTGAGCTTCTCCCTCCTGCGGCTCACCTACGACCAGCGGGT
GACCGCCACCGCAGATACCCTCCTCCTCCGAGACTCGGCCGGGGTCAAGG
TGCTCCACATCAGGCCCTCCTCTGCTTCCCCCCCACCAGGCACCGTGCCG
TCTGCCTCCGCCTCCTCCTCCTCGTCTTCCGCGGCGGCGGCGGCTGCGGC
TACGGCGGCGACGGGGACCTCGTCCGCTCGCCCACCCCCTTCTAACGCCG
CCAGTGCAGGCCTCGATGCCAGGCGCAGGGGCAGTAGTGCTGCGTCCGGG
CTGAGCTTCTCCCTCCTGCGGCTCACCTACGACCAGCGGGTGACCGCCAC
CGCAGATACCCTCCTCCTCCGAGACTCGGCCGGGGTCAAGGTGCTCCACA
TCAGGCCCTCCTCTGCTTCCCCCCCACCAGGCACCGTGCCGTCTGCCTCC
GCCTCCTCCTCCTCGTCTTCCGCGGCGGCGGCGGCTGCGGCTACGGCGGC
GACGGGGACCTCGTCCGCTCGCCCACCCCCTTCTAACGCCGCCAGTGCAG
GCCTCGATGCCAGGCGCAGGGGCAGTAGTGCT
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