prot_S-ischiensis_contig84.20041.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig84.20041.1
Unique Nameprot_S-ischiensis_contig84.20041.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length437
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig84.20041.1 vs. uniprot
Match: D8LDI5_ECTSI (MscS Mechanosensitive ion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDI5_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 1.820e-17
Identity = 50/82 (60.98%), Postives = 64/82 (78.05%), Query Frame = 0 
Query:  262 MRGQRKRVKEETKKFNQQKEEFMNVEGEAEVDADIMKELRDLKEKMAGPRDTYAMETRAYNPAFAEDHPDDDDAYDSKLAQV 343
            M  QRKRVK E+ KF+ +K+EFM+V+GEAE D DIMKELRD+KEKMAGP D+YA +TRAYNP FA    D+++ YD K+ + 
Sbjct:  167 MSNQRKRVKVESAKFDAEKDEFMDVDGEAEFDVDIMKELRDMKEKMAGPGDSYAKDTRAYNPDFAAAAGDEEE-YDKKIKEA 247
[Close]
BLAST of mRNA_S-ischiensis_contig84.20041.1 vs. uniprot
Match: A0A6H5KGP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGP0_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.770e-17
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 0 
Query:  262 MRGQRKRVKEETKKFNQQKEEFMNVEGEAEVDADIMKELRDLKEKMAGPRDTYAMETRAYNPAFAEDHPDDDDAYDSKLAQV 343
            M  QRKRVK E+ KF+ +K+EFMNV+GEAE D DIMKELRD+KEKMAGP D YA +TRAYNP FA    D+++ YD K+ + 
Sbjct:  334 MSNQRKRVKVESAKFDAEKDEFMNVDGEAEFDVDIMKELRDMKEKMAGPGDKYAKDTRAYNPDFAAAAGDEEE-YDKKIREA 414
[Close]
BLAST of mRNA_S-ischiensis_contig84.20041.1 vs. uniprot
Match: A0A835YR84_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR84_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 7.590e-13
Identity = 43/81 (53.09%), Postives = 51/81 (62.96%), Query Frame = 0 
Query:  249 YVMYRAFIKQGNIMRGQRKRVKEETKKFNQQKEEFMNVEGEAEVDADIMKELRDLKEKMAGPRDTYAMETRAYNPAFAEDH 329
            YVMYR  +     M  QRKR++EE  KF Q  EE M VEGE   + D+M+ELR +KE+  GP D YA ETR YNP FA  H
Sbjct:   84 YVMYRCSVISATDMNAQRKRIREENTKFQQNAEEHM-VEGEVAYNEDLMRELRRMKEENVGPGDKYAKETRRYNPEFAATH 163
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig84.20041.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LDI5_ECTSI1.820e-1760.98MscS Mechanosensitive ion channel n=1 Tax=Ectocarp... [more]
A0A6H5KGP0_9PHAE2.770e-1762.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YR84_9STRA7.590e-1353.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 155..175
NoneNo IPR availableCOILSCoilCoilcoord: 262..289
NoneNo IPR availableCOILSCoilCoilcoord: 386..413
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..436
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..20
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.805

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig84contigS-ischiensis_contig84:74845..86797 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig84.20041.1mRNA_S-ischiensis_contig84.20041.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig84 73752..86838 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig84.20041.1 ID=prot_S-ischiensis_contig84.20041.1|Name=mRNA_S-ischiensis_contig84.20041.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=437bp
MRLPTVIVACALALAHGCHAFVSPIPAARVQVARTPCVADRVTPLPAFPQ
ARPRCFARAPPVRMAAAAAPGEDSGHSFVGSLMSRRPQWRGRQVGEELFR
AQARGLAASCASLRRAATKFALGLLLAWAFCFSFNPPSATAIAPPTTIGR
STRRMQEKAAEVETMTEEEEEFLRQATVGTTGAEAPESVETPEELMAGAR
APKTEGLSAAGLRKQDKNYSPFPTRAEKRKEVSTFKSVTKAAISIGWCYV
MYRAFIKQGNIMRGQRKRVKEETKKFNQQKEEFMNVEGEAEVDADIMKEL
RDLKEKMAGPRDTYAMETRAYNPAFAEDHPDDDDAYDSKLAQVQDDLKKT
RKGQAPRKKGKRGGGGGGGVSGGGGGDSGGGDIDLLSVEKEDAEKAEKEA
AMSAEEAAKKKADVERLNKLFGAGPAAGDSDDLVPE*
back to top