prot_S-ischiensis_contig82.19940.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig82.19940.1
Unique Nameprot_S-ischiensis_contig82.19940.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length377
Homology
BLAST of mRNA_S-ischiensis_contig82.19940.1 vs. uniprot
Match: A0A2Z4MTA2_SACJA (HMG-box containing protein isoform 1 n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2Z4MTA2_SACJA)

HSP 1 Score: 119 bits (298), Expect = 1.890e-26
Identity = 105/315 (33.33%), Postives = 141/315 (44.76%), Query Frame = 0
Query:   74 GMPVDAVLRTLRTSGLQFLLGEGTALLSLQEFSQLESTLESCTIFGFDGNSAAAFAVMDGCENFCQDIEPGCYELGISQQMDRKERRRFEEVALRMLAKGEHIVDTGGIFWAFCDGTGNASSPP-----------VFIHIIAGQDNTWGCHVHEQRGSMKVEVETLRTGSADPAIMIWRHPRVIKDQGVLSWNQQDAHQSKYMRATTGDLPCCEYVVTNNGSSQLKLSISFAGNGKASTEMRRAPKRQKKDPNRPRGYISAFNFFVQTKRPHYLNQHPQVQDMSIEQNNVINKVLGRLWKLATKDERRVYEEMAT 377
            G PVD +   +R +GL FL     AL SL   + L   ++   IF +DG  AA          FCQ +  G Y+LG+S    R + R      +  L  G      GG        +   SSP            V +H     + T G  VH  R      VE    G +     I      ++D  V+ +     H  ++ R  TG L         +G S+     +     + + E   APKR KKDPNRPRGYISAFNFFV+ KRP Y+   P  Q  S+E NN INK+LG++WK AT+ E++ YEE AT
Sbjct:    9 GPPVD-LFDGVRNAGLLFLDLGCEALASLSAANDLHG-IDRSRIFAYDGVHAAILVTEGRRRIFCQQVSCGLYDLGVSIN-SRSDWRDALSATVTSLIMGSTESIAGGAPCGLNSRSEWFSSPAWSSVVHMAPSRVAVHQRCADEATEGLSVHYFR----TMVEDRHLGLSS----IHDRQDNVQDAFVI-FGTHSRHPVRF-RQHTGAL--------GHGRSRYSKPQT-----RVAYESATAPKRHKKDPNRPRGYISAFNFFVKDKRPTYVQSRPNAQGHSLEHNNEINKMLGKVWKTATEQEKKTYEEKAT 297          
BLAST of mRNA_S-ischiensis_contig82.19940.1 vs. uniprot
Match: A0A6H5JSJ1_9PHAE (HMG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSJ1_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.640e-24
Identity = 100/349 (28.65%), Postives = 159/349 (45.56%), Query Frame = 0
Query:   39 VVETTLV--TAGDIETRGWVGLSA-EGKVWVSQANVTSGMPVDAVLRTLRTSGLQFLLGEGTALLSLQEFSQLESTLESCTIFGFDGNSAAAFAVMDGCENFCQDIEPGCYELGISQQMDRKERRRFEEVALRMLAKGEHIVDTGGIFWAFCDGTGNASSPPVFIHIIAGQDNTWGCHVHEQRGSMKVEVETLRTGSADPAIMIWRHPRVIKDQGVLSWNQQDAHQSKYMRATTGDLPCCEYVVTN---NGSSQ-LKLSISFAGNGKASTEMRRA-------PKRQKKDPNRPRGYISAFNFFVQTKRPHYLNQHPQVQDMSIEQNNVINKVLGRLWKLATKDERRVYE 373
            VV T L   ++    T  WVG S+   +VW  Q +  +G+    +   +R +G  FL     A+  L E   L + +++  IF FDG  AA     D    FCQ I  G Y+LG+S +     +   +  A  ++  G      G +          +   P+F  +       W   VH     + V   +   G+ D   + ++H  V  D G++S  +++ + S    A         +V+ N   +GS++ ++ S +       S+E RR        PKR++KDPNRPRGY+SAFNFFV+ KR  Y+      Q +S   NN +NK+LG+ WK  T +E+  Y+
Sbjct:   33 VVSTRLPAKSSSSAGTTHWVGFSSCRKRVWGMQGSNANGVLPIGIADRIRNAGCLFLNSTRGAVEGLSEMKDL-AEIDTSRIFAFDGRHAAILVTEDCTRVFCQQISAGLYDLGVSIEPRPDWQDILDAAASSLIPDGVGSNACGAV----------SGMEPLFKAVPL-----WASVVHVAPHRVSVHQRSA-DGATDG--VAFQHSLVSGDGGLVSTAKEEMYHSSVQDA---------FVIFNTHPSGSTRFVEHSRALTSGHTHSSEPRRTVPKKTSPPKRKRKDPNRPRGYVSAFNFFVKDKRSAYVRD---AQGVSPGNNNEVNKMLGQAWKELTTEEKNCYQ 350          
BLAST of mRNA_S-ischiensis_contig82.19940.1 vs. uniprot
Match: D7G5V4_ECTSI (HMG box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5V4_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 8.490e-20
Identity = 88/317 (27.76%), Postives = 142/317 (44.79%), Query Frame = 0
Query:   68 QANVTSGMPVDAVLRTLRTSGLQFLLGEGTALLSLQEFSQLESTLESCTIFGFDGNSAAAFAVMDGCENFCQDIEPGCYELGISQQMDRKERRRFEEVALRMLAKGEHIVDTGGIFWAFCDGTGNASSPPVFIHIIAGQDNTWGCHVHEQRGSMKVEVETLRTGSADPAIMIWRHPRVIKDQGVLSWNQQDAHQSKYMRATTGDLPCCEYVVTN---NGSSQ-LKLSISFAGNGKASTEMRRA-------PKRQKKDPNRPRGYISAFNFFVQTKRPHYLNQHPQVQDMSIEQNNVINKVLGRLWKLATKDERRVYE 373
            Q + T+G+       ++R +G  FL     A+  L E   L   +++  IF FDG  AA     D    FCQ I  G Y+LG+S +     +   +  A  ++  G      G +              P+F  +       W   VH     + V  +    G  D   + ++H  V  D G++S  +++ + +    A         +V+ N   +GS++ ++ S +       S+E RR        P+R++KDPNRPRGY+SAFNFFV+ KR  Y+      Q +S   NN +NK+LG+ WK  T +E+  Y+
Sbjct:    2 QGSNTNGVLPIGFADSIRKAGCLFLNSTLGAVEGLSEVKDLAG-IDTSRIFAFDGRHAAILVTEDCTRVFCQQISAGLYDLGVSIEPRPDWQDILDAAASSLIPDGVGSNACGAV----------GGMEPLFNALPL-----WASVVHVAPHRVSVH-QRSSDGVTDG--VAFQHSLVNGDGGLVSTAKEEMYHNSVQDA---------FVIFNTHPSGSTRFVEHSQALTSGHTRSSEARRMVPKKTSPPRRKRKDPNRPRGYVSAFNFFVKDKRSAYVRD---AQGVSPGNNNEVNKMLGQAWKELTTEEKNCYQ 287          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig82.19940.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2Z4MTA2_SACJA1.890e-2633.33HMG-box containing protein isoform 1 n=1 Tax=Sacch... [more]
A0A6H5JSJ1_9PHAE1.640e-2428.65HMG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7G5V4_ECTSI8.490e-2027.76HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 322..376
e-value: 3.4E-7
score: 30.6
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 317..377
score: 11.494
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10coord: 303..377
e-value: 6.4E-13
score: 50.9
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 303..376
NoneNo IPR availablePANTHERPTHR13711SWI/SNF-RELATED CHROMATIN BINDING PROTEINcoord: 297..376

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig82contigS-ischiensis_contig82:693316..696541 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig82.19940.1mRNA_S-ischiensis_contig82.19940.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig82 693316..697158 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig82.19940.1 ID=prot_S-ischiensis_contig82.19940.1|Name=mRNA_S-ischiensis_contig82.19940.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=377bp
MAGLYGLLAPKQLSGRLVVGVPANCGFERVPEDRFDKVVVETTLVTAGDI
ETRGWVGLSAEGKVWVSQANVTSGMPVDAVLRTLRTSGLQFLLGEGTALL
SLQEFSQLESTLESCTIFGFDGNSAAAFAVMDGCENFCQDIEPGCYELGI
SQQMDRKERRRFEEVALRMLAKGEHIVDTGGIFWAFCDGTGNASSPPVFI
HIIAGQDNTWGCHVHEQRGSMKVEVETLRTGSADPAIMIWRHPRVIKDQG
VLSWNQQDAHQSKYMRATTGDLPCCEYVVTNNGSSQLKLSISFAGNGKAS
TEMRRAPKRQKKDPNRPRGYISAFNFFVQTKRPHYLNQHPQVQDMSIEQN
NVINKVLGRLWKLATKDERRVYEEMAT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
IPR036910HMG_box_dom_sf