prot_S-ischiensis_contig82.19924.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig82.19924.1
Unique Nameprot_S-ischiensis_contig82.19924.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length129
Homology
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BLAST of mRNA_S-ischiensis_contig82.19924.1 vs. uniprot
Match: D8LAU6_ECTSI (rRNA-processing protein EFG1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU6_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 3.850e-5
Identity = 27/44 (61.36%), Postives = 36/44 (81.82%), Query Frame = 0 
Query:   84 ELEQGIEDRKVQERERQLALRNHKPRFFDRRAALRKLAQIHKRL 127
            ELE  + +R+ QERER LA++ HK +FFDRR ALR+LAQIH++L
Sbjct:  169 ELEGKVSEREKQERERTLAIKYHKAKFFDRRKALRRLAQIHRKL 212
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig82.19924.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LAU6_ECTSI3.850e-561.36rRNA-processing protein EFG1 n=1 Tax=Ectocarpus si... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 71..95
NoneNo IPR availablePANTHERPTHR33911FAMILY NOT NAMEDcoord: 28..128
IPR019310rRNA-processing protein Efg1PFAMPF10153Efg1coord: 55..128
e-value: 5.5E-11
score: 42.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig82contigS-ischiensis_contig82:399328..402516 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig82.19924.1mRNA_S-ischiensis_contig82.19924.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig82 399328..402516 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig82.19924.1 ID=prot_S-ischiensis_contig82.19924.1|Name=mRNA_S-ischiensis_contig82.19924.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=129bp
MPHTNKARRAEEYRGDGYSGGGGRLGAGGWVPKRGMREAEEDQRPAKRPR
RQSAKNQIRSLSRMLAREGISDEQKEELREQVRELEQGIEDRKVQERERQ
LALRNHKPRFFDRRAALRKLAQIHKRLHQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019310Efg1