prot_S-ischiensis_contig81.19873.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-ischiensis_contig81.19873.1
Unique Name	prot_S-ischiensis_contig81.19873.1
Type	polypeptide
Organism	Schizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length	45

Homology

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BLAST of mRNA_S-ischiensis_contig81.19873.1 vs. uniprot
Match: D8LMC3_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMC3_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 4.990e-10
Identity = 26/44 (59.09%), Postives = 36/44 (81.82%), Query Frame = 0

Query:    1 MSSLWPMFKLWWPGQPAWPAAYYRKFVLILVLIALTSILATFVS 44
            M S+WPM KLWWPG  + P+AY++KF  IL+ IALTS+LAT+++
Sbjct: 1493 MYSIWPMVKLWWPGWVSLPSAYHQKFCYILIFIALTSVLATYIA 1536

The following BLAST results are available for this feature:

BLAST of mRNA_S-ischiensis_contig81.19873.1 vs. uniprot

BLAST of mRNA_S-ischiensis_contig81.19873.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LMC3_ECTSI	4.990e-10	59.09	Cellulose synthase (UDP-forming), family GT2 n=2 T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 20..43
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..19
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 44..44
None	No IPR available	TMHMM	TMhelix		coord: 20..42

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-ischiensis_contig81	contig	S-ischiensis_contig81:253095..253229 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Schizocladia ischiensis KU_0333	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-ischiensis_contig81.19873.1	mRNA_S-ischiensis_contig81.19873.1	Schizocladia ischiensis KU_0333	mRNA	S-ischiensis_contig81 252947..253287 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-ischiensis_contig81.19873.1 ID=prot_S-ischiensis_contig81.19873.1|Name=mRNA_S-ischiensis_contig81.19873.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=45bp
MSSLWPMFKLWWPGQPAWPAAYYRKFVLILVLIALTSILATFVS*