mRNA_S-ischiensis_contig81.19873.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig81.19873.1
Unique NamemRNA_S-ischiensis_contig81.19873.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig81.19873.1 vs. uniprot
Match: D8LMC3_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMC3_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 8.390e-17
Identity = 36/63 (57.14%), Postives = 50/63 (79.37%), Query Frame = 2 
Query:   92 FAGEEKWIWPASYGACLVVMSSLWPMFKLWWPGQPAWPAAYYRKFVLILVLIALTSILATFVS 280
            F  +  WI+ AS+GAC+VVM S+WPM KLWWPG  + P+AY++KF  IL+ IALTS+LAT+++
Sbjct: 1474 FDEDGIWIFLASFGACIVVMYSIWPMVKLWWPGWVSLPSAYHQKFCYILIFIALTSVLATYIA 1536
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig81.19873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMC3_ECTSI8.390e-1757.14Cellulose synthase (UDP-forming), family GT2 n=2 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig81contigS-ischiensis_contig81:252947..253287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size341
Cds size135
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig81.19873.1prot_S-ischiensis_contig81.19873.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig81 253095..253229 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817313.0685656-UTR-S-ischiensis_contig81:252946..2530941622817313.0685656-UTR-S-ischiensis_contig81:252946..253094Schizocladia ischiensis KU_0333UTRS-ischiensis_contig81 252947..253094 +
1695741018.4421432-UTR-S-ischiensis_contig81:252946..2530941695741018.4421432-UTR-S-ischiensis_contig81:252946..253094Schizocladia ischiensis KU_0333UTRS-ischiensis_contig81 252947..253094 +
1622817313.0985959-UTR-S-ischiensis_contig81:253229..2532871622817313.0985959-UTR-S-ischiensis_contig81:253229..253287Schizocladia ischiensis KU_0333UTRS-ischiensis_contig81 253230..253287 +
1695741018.4615574-UTR-S-ischiensis_contig81:253229..2532871695741018.4615574-UTR-S-ischiensis_contig81:253229..253287Schizocladia ischiensis KU_0333UTRS-ischiensis_contig81 253230..253287 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817313.0830367-CDS-S-ischiensis_contig81:253094..2532291622817313.0830367-CDS-S-ischiensis_contig81:253094..253229Schizocladia ischiensis KU_0333CDSS-ischiensis_contig81 253095..253229 +
1695741018.452085-CDS-S-ischiensis_contig81:253094..2532291695741018.452085-CDS-S-ischiensis_contig81:253094..253229Schizocladia ischiensis KU_0333CDSS-ischiensis_contig81 253095..253229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig81.19873.1

>prot_S-ischiensis_contig81.19873.1 ID=prot_S-ischiensis_contig81.19873.1|Name=mRNA_S-ischiensis_contig81.19873.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=45bp
MSSLWPMFKLWWPGQPAWPAAYYRKFVLILVLIALTSILATFVS*
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mRNA from alignment at S-ischiensis_contig81:252947..253287+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig81.19873.1 ID=mRNA_S-ischiensis_contig81.19873.1|Name=mRNA_S-ischiensis_contig81.19873.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=341bp|location=Sequence derived from alignment at S-ischiensis_contig81:252947..253287+ (Schizocladia ischiensis KU_0333)
GCCCCTTCGCCCTCCCTTGCAGGTGCTGATCGAAGACACACACACGTCTC
ATTCCCTGCCTCACCCCCATAACTTCTGCGTGGGCAGGTGCTTCGCCGGT
GAAGAAAAGTGGATCTGGCCCGCGTCCTACGGTGCCTGCCTGGTGGTCAT
GAGCTCGCTGTGGCCCATGTTCAAGCTGTGGTGGCCCGGGCAGCCAGCGT
GGCCGGCCGCCTACTACCGGAAGTTCGTCCTCATCCTCGTCTTAATCGCC
CTCACCAGCATCCTTGCCACCTTCGTCTCGTAGCTTGAGGAGGAGGGCGG
CAGGGGCCGGGGGGGGGGTTGAGGCGGAGGACGAGTTGGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig81:252947..253287+

>mRNA_S-ischiensis_contig81.19873.1 ID=mRNA_S-ischiensis_contig81.19873.1|Name=mRNA_S-ischiensis_contig81.19873.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=270bp|location=Sequence derived from alignment at S-ischiensis_contig81:252947..253287+ (Schizocladia ischiensis KU_0333)
ATGAGCTCGCTGTGGCCCATGTTCAAGCTGTGGTGGCCCGGGCAGCCAGC
GTGGCCGGCCGCCTACTACCGGAAGTTCGTCCTCATCCTCGTCTTAATCG
CCCTCACCAGCATCCTTGCCACCTTCGTCTCGTAGATGAGCTCGCTGTGG
CCCATGTTCAAGCTGTGGTGGCCCGGGCAGCCAGCGTGGCCGGCCGCCTA
CTACCGGAAGTTCGTCCTCATCCTCGTCTTAATCGCCCTCACCAGCATCC
TTGCCACCTTCGTCTCGTAG
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