prot_S-ischiensis_contig8.19772.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig8.19772.1
Unique Nameprot_S-ischiensis_contig8.19772.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length448
Homology
BLAST of mRNA_S-ischiensis_contig8.19772.1 vs. uniprot
Match: D8LC33_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC33_ECTSI)

HSP 1 Score: 241 bits (615), Expect = 1.300e-71
Identity = 180/441 (40.82%), Postives = 228/441 (51.70%), Query Frame = 0
Query:   54 LPDNDAEARVGGHVEDVDCMLEVRPTQTALDLSLHREVSYSFEIVAAYL---------DTAGRGAQSDDPRPAAHPEPXXXXXXXXXXXXXXXXXXVGRAAVA---------------------------------VGDAATLVLQDNQGSTYTFYTFQVAVFDADSGAMQVERFNMFCWGVFHYTCALEHVCKLEISEVEVYLVSAHTYNHRLRASGKEYGLRVLLSRPPPPDWTEASTSFPRRVAASHWTL-----GGCTDSSPGASKDSYTPTAEGARRSRCVAKPARATAPDTANNAITEMSTHGLDTQECSARKHSLRRHFVCTARGRRRSQGSREGYLDLAFGAKTRDDKKLRRVVELVNDLLLRFATDVESSGFSGEGKDAQADSRSCCVCFRRKACVVMFPCMHMSTCPQCSADLSSXXXXRTDIREKHTVFL 447
            +PDN+ EA  G HVED+DC L VRPT+TALDL    EVSYSFEIVAA L           +GR      P  A    P                   G+  VA                                 V D ATLVL+DNQG TY FYTFQV  FDADSGAM ++R+N+F  GVF Y+CALE++ K+EI+E  VY++SAH + H LR + KE+GLRV+ S P     ++A+T+ PR    ++  +     GG + SS G    + + T  GA  +R  A+ A           +            C   +   RR     ARG   + G    YL+L FG K  DD+ LRR VE+VN+LLLRFA DVE     GE K+      +CCVCFRR++ VV FPCMHM+TCPQCS  L+     R +I EKHTVFL
Sbjct:    1 MPDNELEAAKGLHVEDIDCSLVVRPTRTALDLRFFGEVSYSFEIVAARLVRPPKRPPDARSGRCRNKCSPGKAC---PCNHDSPARSRRLAEDVEPPGKTEVALSVPEGDGEXXXXXXXXXXXXXGVHPHHSLNMGVNDVATLVLEDNQGITYDFYTFQVVEFDADSGAMALDRWNLFHCGVFRYSCALENISKVEITEGNVYMMSAHAFEH-LRQT-KEFGLRVIFSVPL--GASQAATAHPRSPRPNNAGMNFSDPGGSSPSSDGDGISAVSGTVGGAPVARAAARRAAGAPRRRRWGVLFRRLLLCGRAGWCFGGRGWWRRP---AARGVLSTSGELM-YLNLLFGKKELDDRNLRRPVEMVNELLLRFANDVEVD--VGEKKEG-----NCCVCFRRRSRVVTFPCMHMATCPQCSESLTVCPLCRANISEKHTVFL 423          
BLAST of mRNA_S-ischiensis_contig8.19772.1 vs. uniprot
Match: A0A6H5JJL0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJL0_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 8.530e-43
Identity = 125/289 (43.25%), Postives = 163/289 (56.40%), Query Frame = 0
Query:  170 QVAVFDADSGAMQVERFNMFCWGVFHYTCALEHVCKLEISEVEVYLVSAHTYNHRLRASGKEYGLRVLLSRPPPPDWTEASTSFPR--RVAASHWTLGGCTDSSPGASKDSYT---------PTAEGARRSRCVAKPARATAPDTANNAITEMSTHGLDTQECSARKHSLRRHFVCTARGRRRSQGSREGYLDLAFGAKTRDDKKLRRVVELVNDLLLRFATDVESSGFSGEGKDAQADSRSCCVCFRRKACVVMFPCMHMSTCPQCSADLSSXXXXRTDIREKHTVFL 447
            +V  FDADSGAM ++R+N+F  GVF Y+CALE++ K+EI+E  VY++SAH + H LR + KE+GLRV+ S P     ++ +T+ PR  R + +   L     SSP +  D  +         P A G  R R V  P R          +      G     C   +   RR     ARG   + G    YL+L FG K  DD+ LRR VE+VN+LLLRFA DVE  G  GE K+      +CCVCFRR++ VVMFPCMHM+TCPQCS  L+     R +I EKHTVFL
Sbjct:  354 EVVEFDADSGAMALDRWNLFNCGVFRYSCALENISKIEITEGNVYMMSAHAFEH-LRQT-KEFGLRVIFSVPL--GASQETTAHPRSPRPSNAAMNLSDTDGSSPSSDGDGISGVSGTVGGAPVARGTAR-RAVGAPRRRRW-GVLFRRLLLCGRAGW----CFGGRGWWRRP---AARGVLSTSGELM-YLNLLFGKKELDDRNLRRPVEMVNELLLRFANDVEVDG--GEKKEG-----NCCVCFRRRSRVVMFPCMHMATCPQCSESLAVCPLCRANISEKHTVFL 621          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19772.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LC33_ECTSI1.300e-7140.82RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JJL0_9PHAE8.530e-4343.25RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 398..441
e-value: 3.4E-9
score: 36.4
NoneNo IPR availablePANTHERPTHR10044INHIBITOR OF APOPTOSIScoord: 390..446
NoneNo IPR availablePANTHERPTHR10044:SF139DEATH-ASSOCIATED INHIBITOR OF APOPTOSIS 2coord: 390..446
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..37
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 38..447
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..19
NoneNo IPR availableTMHMMTMhelixcoord: 20..37
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 382..447
e-value: 3.1E-13
score: 50.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 401..436
score: 9.922

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3806809..3816129 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19772.1mRNA_S-ischiensis_contig8.19772.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig8 3804943..3816293 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig8.19772.1 ID=prot_S-ischiensis_contig8.19772.1|Name=mRNA_S-ischiensis_contig8.19772.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=448bp
MEIVDRSDRKVILRQRHAPLLRAVAACGLLAALFWLLDAKHPKALLHCTR
HAVLPDNDAEARVGGHVEDVDCMLEVRPTQTALDLSLHREVSYSFEIVAA
YLDTAGRGAQSDDPRPAAHPEPENVAAGDGDGGGGGGRGGVGRAAVAVGD
AATLVLQDNQGSTYTFYTFQVAVFDADSGAMQVERFNMFCWGVFHYTCAL
EHVCKLEISEVEVYLVSAHTYNHRLRASGKEYGLRVLLSRPPPPDWTEAS
TSFPRRVAASHWTLGGCTDSSPGASKDSYTPTAEGARRSRCVAKPARATA
PDTANNAITEMSTHGLDTQECSARKHSLRRHFVCTARGRRRSQGSREGYL
DLAFGAKTRDDKKLRRVVELVNDLLLRFATDVESSGFSGEGKDAQADSRS
CCVCFRRKACVVMFPCMHMSTCPQCSADLSSCPLCRTDIREKHTVFL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING