prot_S-ischiensis_contig8.19763.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig8.19763.1
Unique Nameprot_S-ischiensis_contig8.19763.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length135
Homology
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BLAST of mRNA_S-ischiensis_contig8.19763.1 vs. uniprot
Match: A0A835ZAM5_9STRA (Protein transport protein SEC23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAM5_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.270e-18
Identity = 52/122 (42.62%), Postives = 69/122 (56.56%), Query Frame = 0 
Query:    2 AYFAGLGRRALSQGSGVDIFCGGNEALGAAALHALVAPTGGYVLTHPAFGAEFREDLRKSTCEQAMSEGED------VHGCIVDVRTSRELQLRHVIGPASLSDDHDRIDAAAVHASAMAAR 117
            AYFAGLG +A + G GVD+FC G  ALGAA LHAL  PTGG V+    FGA F+ DL +   +   +          +  C++DVRT    +L  V+GPAS +D H  +D  A   +  AA+
Sbjct:  341 AYFAGLGEQASAGGIGVDLFCAGARALGAATLHALTRPTGGVVVARQTFGAAFQRDLLRVLSQPPGAXXXXXXXXAGLRACVLDVRTCARAELLRVVGPASSTDAHGGVDDDAYRIALAAAQ 462
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19763.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZAM5_9STRA1.270e-1842.62Protein transport protein SEC23 n=1 Tax=Tribonema ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410coord: 2..72
e-value: 3.3E-10
score: 41.3
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 3..62
IPR006896Sec23/Sec24, trunk domainPFAMPF04811Sec23_trunkcoord: 4..59
e-value: 5.7E-5
score: 22.8
NoneNo IPR availableGENE3D2.60.40.1670coord: 73..100
e-value: 3.3E-10
score: 41.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3739449..3744317 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19763.1mRNA_S-ischiensis_contig8.19763.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig8 3739448..3744317 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig8.19763.1 ID=prot_S-ischiensis_contig8.19763.1|Name=mRNA_S-ischiensis_contig8.19763.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=135bp
TAYFAGLGRRALSQGSGVDIFCGGNEALGAAALHALVAPTGGYVLTHPAF
GAEFREDLRKSTCEQAMSEGEDVHGCIVDVRTSRELQLRHVIGPASLSDD
HDRIDAAAVHASAMAARATGPHMWDEQGRQEEEEE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036465vWFA_dom_sf
IPR006896Sec23/24_trunk_dom