prot_S-ischiensis_contig8.19756.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig8.19756.1
Unique Nameprot_S-ischiensis_contig8.19756.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length109
Homology
BLAST of mRNA_S-ischiensis_contig8.19756.1 vs. uniprot
Match: D7G3E5_ECTSI (Spt4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3E5_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 1.830e-42
Identity = 67/106 (63.21%), Postives = 78/106 (73.58%), Query Frame = 0
Query:    3 PEHLKALRACKRCSLVKQTDQFHNIGCENCVFLDMEGDMRRVAECTSTYFSGLIAMMDPDKSWVSKWQRLRGLKAGMYAIEVTGEFPEKDREYMEERNIAWHAKKP 108
            P  LK LRACKRCSLVK  DQF N GCENC FL ME D  RV +CT+TYFSGLIAMMDP+ SWV KWQR+   + GMYAIEV GE P +  E++E++ I +H K P
Sbjct:   26 PTSLKGLRACKRCSLVKGNDQFVNHGCENCPFLQMESDQARVQDCTTTYFSGLIAMMDPESSWVGKWQRISECRPGMYAIEVVGELPGEVLEFLEQKRIPFHCKPP 131          
BLAST of mRNA_S-ischiensis_contig8.19756.1 vs. uniprot
Match: A0A835Z5B7_9STRA (Spt4/RpoE2 zinc finger-domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5B7_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.320e-41
Identity = 66/106 (62.26%), Postives = 77/106 (72.64%), Query Frame = 0
Query:    3 PEHLKALRACKRCSLVKQTDQFHNIGCENCVFLDMEGDMRRVAECTSTYFSGLIAMMDPDKSWVSKWQRLRGLKAGMYAIEVTGEFPEKDREYMEERNIAWHAKKP 108
            P  LKALRACKRC+LVK   QF   GCENC FL +E    RV ECTS+YFSG+IAM++P +SWV++WQR+R  K GMYAIEV GEFP  D+EYM E  I W  K P
Sbjct:   24 PGELKALRACKRCALVKTLTQFTEQGCENCPFLRIEESAERVHECTSSYFSGMIAMLNPKESWVARWQRIRAFKPGMYAIEVIGEFPPHDQEYMAENGIRWQCKPP 129          
BLAST of mRNA_S-ischiensis_contig8.19756.1 vs. uniprot
Match: K3WRG9_GLOUD (Spt4 domain-containing protein n=33 Tax=Oomycota TaxID=4762 RepID=K3WRG9_GLOUD)

HSP 1 Score: 123 bits (308), Expect = 4.850e-34
Identity = 54/103 (52.43%), Postives = 72/103 (69.90%), Query Frame = 0
Query:    3 PEHLKALRACKRCSLVKQTDQFHNIGCENCVFLDMEGDMRRVAECTSTYFSGLIAMMDPDKSWVSKWQRLRGLKAGMYAIEVTGEFPEKDREYMEERNIAWHA 105
            P   + LRAC  CSL+K   QF++ GCENC FL M  + +RVAECTS YF G+IAMM P +SWV+KWQR+  L  G+YA+ V+GE PE  + ++E+RNI +  
Sbjct:   24 PNTFRELRACMTCSLIKTFTQFYDTGCENCAFLQMADNRQRVAECTSAYFEGMIAMMQPKESWVAKWQRIVRLIPGIYAVSVSGELPESIKRFLEDRNIPYRV 126          
BLAST of mRNA_S-ischiensis_contig8.19756.1 vs. uniprot
Match: A0A7S3LYU5_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LYU5_9STRA)

HSP 1 Score: 117 bits (294), Expect = 5.620e-32
Identity = 50/103 (48.54%), Postives = 73/103 (70.87%), Query Frame = 0
Query:    3 PEHLKALRACKRCSLVKQTDQFHNIGCENCVFLDMEGDMRRVAECTSTYFSGLIAMMDPDKSWVSKWQRLRGLKAGMYAIEVTGEFPEKDREYMEERNIAWHA 105
            P+  K LRAC RCSL+K  +QF++ GCENC F+D+EG+  R+ ECT++YF G IA+++P  SWV+KWQR+   + G+YAIE+ GE P+   E+ E   + + A
Sbjct:   13 PDEFKGLRACLRCSLIKTFEQFNDKGCENCEFIDLEGNKGRIEECTTSYFEGAIALVEPQGSWVAKWQRIAQYQPGLYAIEMIGELPDDVIEHCENMGLPYKA 115          
BLAST of mRNA_S-ischiensis_contig8.19756.1 vs. uniprot
Match: A0A7S2IAX2_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IAX2_9STRA)

HSP 1 Score: 116 bits (290), Expect = 5.260e-31
Identity = 52/107 (48.60%), Postives = 66/107 (61.68%), Query Frame = 0
Query:    2 TPEHLKALRACKRCSLVKQTDQFHNIGCENCVFLDMEGDMRRVAECTSTYFSGLIAMMDPDKSWVSKWQRLRGLKAGMYAIEVTGEFPEKDREYMEERNIAWHAKKP 108
            TP  L+ +RACKRC ++K  DQF N GCENC FL MEG   R   CT+ +F G  A+MDP  SWV+KW R+     G+YAI VTG+F  +  E +E R   W  + P
Sbjct:   44 TPSSLRGMRACKRCGILKTFDQFFNEGCENCPFLQMEGGTERCNRCTTAFFEGQAAVMDPRASWVAKWLRVDAYVPGVYAISVTGQFDREIEEELENRGCRWRCRPP 150          
BLAST of mRNA_S-ischiensis_contig8.19756.1 vs. uniprot
Match: A0A812ZC74_SYMMI (SUPT4H1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812ZC74_SYMMI)

HSP 1 Score: 113 bits (283), Expect = 1.390e-30
Identity = 46/99 (46.46%), Postives = 69/99 (69.70%), Query Frame = 0
Query:    9 LRACKRCSLVKQTDQFHNIGCENCVFLDMEGDMRRVAECTSTYFSGLIAMMDPDKSWVSKWQRLRGLKAGMYAIEVTGEFPEKDREYMEERNIAWHAKK 107
            +R C RCSL+K  DQF+  GCENC FL + G+  R+  CTS YF+G+IA+++P  SWV++WQ++     G+YA+EV GE P+   EY E+ N ++ ++K
Sbjct:    1 MRCCLRCSLLKTVDQFYESGCENCEFLHLSGNQSRINNCTSAYFAGMIALLEPHGSWVARWQKIENAVPGLYAVEVVGELPQDVIEYCEDNNYSYRSQK 99          
BLAST of mRNA_S-ischiensis_contig8.19756.1 vs. uniprot
Match: A0A7S3JXF8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JXF8_9STRA)

HSP 1 Score: 113 bits (283), Expect = 3.420e-30
Identity = 54/106 (50.94%), Postives = 71/106 (66.98%), Query Frame = 0
Query:    3 PEHLKALRACKRCSLVKQTDQFHNIGCENCVFLDMEGDMRRVAECTSTYFSGLIAMMDPDKSWVSKWQRLRGLKAGMYAIEVTGEFPEKDREYMEERNIAWHAKKP 108
            P  +  LRAC RC LVK  DQF+ IGCENC FL+M     RV ECT++ F G+IA+M P+ SW+SKW+ LR    G+YA+ + GE  ++ REY+EE+ IA  A  P
Sbjct:   21 PNGMTGLRACLRCGLVKCMDQFYTIGCENCPFLEMAERQDRVNECTTSDFEGVIALMKPEDSWLSKWEGLRKFYPGVYAVRLYGEPSQETREYLEEKGIACRAIPP 126          
BLAST of mRNA_S-ischiensis_contig8.19756.1 vs. uniprot
Match: W4GN44_9STRA (Spt4 domain-containing protein n=4 Tax=Aphanomyces TaxID=100860 RepID=W4GN44_9STRA)

HSP 1 Score: 112 bits (281), Expect = 5.300e-30
Identity = 49/101 (48.51%), Postives = 71/101 (70.30%), Query Frame = 0
Query:    3 PEHLKALRACKRCSLVKQTDQFHNIGCENCVFLDMEGDMRRVAECTSTYFSGLIAMMDPDKSWVSKWQRLRGLKAGMYAIEVTGEFPEKDREYMEERNIAW 103
            P   + LRAC  CSLVK   QF+  GC+NC FL+M+ +  RV +CT+ YF G+IAMM P +SWV+KW+R+     G+YA+ VTGE  +  ++++EERNI++
Sbjct:   20 PTTFRELRACMICSLVKTYSQFYESGCDNCGFLNMQDNRTRVTDCTTAYFEGMIAMMQPKESWVAKWRRIGKFVPGIYAVAVTGELNDSIKKFLEERNISY 120          
BLAST of mRNA_S-ischiensis_contig8.19756.1 vs. uniprot
Match: A0A3M7RGB3_BRAPC (Transcription elongation factor SPT4 n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7RGB3_BRAPC)

HSP 1 Score: 110 bits (274), Expect = 4.860e-29
Identity = 49/105 (46.67%), Postives = 69/105 (65.71%), Query Frame = 0
Query:    3 PEHLKALRACKRCSLVKQTDQFHNIGCENCV-FLDMEGDMRRVAECTSTYFSGLIAMMDPDKSWVSKWQRLRGLKAGMYAIEVTGEFPEKDREYMEERNIAWHAK 106
            P  L+ +RACK C L+K  DQF N GC+NC  FL + GD  ++ +CTS  F G+IAMMDP+ SWV++WQ++     GMYAI V+G+ PE  +  +  R I + +K
Sbjct:    6 PRSLRGIRACKMCGLIKTMDQFFNEGCDNCENFLHLRGDRDQILDCTSENFDGMIAMMDPEDSWVARWQQIDNFVKGMYAISVSGDLPENIKRTLRTRGIHYKSK 110          
BLAST of mRNA_S-ischiensis_contig8.19756.1 vs. uniprot
Match: B7FXW7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FXW7_PHATC)

HSP 1 Score: 110 bits (275), Expect = 5.760e-29
Identity = 50/106 (47.17%), Postives = 68/106 (64.15%), Query Frame = 0
Query:    3 PEHLKALRACKRCSLVKQTDQFHNIGCENCVFLDMEGDMRRVAECTSTYFSGLIAMMDPDKSWVSKWQRLRGLKAGMYAIEVTGEFPEKDREYMEERNIAWHAKKP 108
            P +LKA+RACKRC ++K  +QF + GCENC FL M  DM++V +CT+ ++ G  A+MDP  SW +KW R+     G+YAI VTG F     E +E R I W  + P
Sbjct:   26 PTNLKAVRACKRCGILKTPEQFLDDGCENCPFLHMADDMQQVNKCTTAFYEGQAAVMDPRDSWAAKWIRVDAYLPGVYAITVTGNFDRDIEEDLENRGIRWRCRPP 131          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19756.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3E5_ECTSI1.830e-4263.21Spt4 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835Z5B7_9STRA1.320e-4162.26Spt4/RpoE2 zinc finger-domain-containing protein n... [more]
K3WRG9_GLOUD4.850e-3452.43Spt4 domain-containing protein n=33 Tax=Oomycota T... [more]
A0A7S3LYU5_9STRA5.620e-3248.54Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2IAX2_9STRA5.260e-3148.60Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A812ZC74_SYMMI1.390e-3046.46SUPT4H1 protein n=1 Tax=Symbiodinium microadriatic... [more]
A0A7S3JXF8_9STRA3.420e-3050.94Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
W4GN44_9STRA5.300e-3048.51Spt4 domain-containing protein n=4 Tax=Aphanomyces... [more]
A0A3M7RGB3_BRAPC4.860e-2946.67Transcription elongation factor SPT4 n=1 Tax=Brach... [more]
B7FXW7_PHATC5.760e-2947.17Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022800Spt4/RpoE2 zinc fingerSMARTSM01389Spt4_2coord: 9..85
e-value: 4.0E-37
score: 139.3
IPR022800Spt4/RpoE2 zinc fingerPFAMPF06093Spt4coord: 9..85
e-value: 1.1E-30
score: 105.5
IPR038510Spt4 superfamilyGENE3D3.30.40.210coord: 1..100
e-value: 4.1E-38
score: 131.5
IPR009287Transcription initiation Spt4PIRSFPIRSF025023Spt4coord: 1..108
e-value: 5.0E-39
score: 130.7
IPR009287Transcription initiation Spt4PANTHERPTHR12882SUPPRESSOR OF TY 4coord: 2..105
IPR029040RNA polymerase subunit RPABC4/transcription elongation factor Spt4SUPERFAMILY63393RNA polymerase subunitscoord: 2..84

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3699535..3701671 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19756.1mRNA_S-ischiensis_contig8.19756.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig8 3698430..3701707 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig8.19756.1 ID=prot_S-ischiensis_contig8.19756.1|Name=mRNA_S-ischiensis_contig8.19756.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=109bp
MTPEHLKALRACKRCSLVKQTDQFHNIGCENCVFLDMEGDMRRVAECTST
YFSGLIAMMDPDKSWVSKWQRLRGLKAGMYAIEVTGEFPEKDREYMEERN
IAWHAKKP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022800Spt4/RpoE2_Znf
IPR038510Spt4_sf
IPR009287Spt4
IPR029040RPABC4/Spt4