prot_S-ischiensis_contig8.19695.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig8.19695.1
Unique Nameprot_S-ischiensis_contig8.19695.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length177
Homology
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BLAST of mRNA_S-ischiensis_contig8.19695.1 vs. uniprot
Match: A0A6H5K182_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K182_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 9.030e-17
Identity = 48/83 (57.83%), Postives = 59/83 (71.08%), Query Frame = 0 
Query:    6 ASRAKARLWMLRTLRDGLRTSQDLDLVAAKRAVPLLLALFDSPSGEVDGVCRGLILDVVCRIAELPSSGPRYLLD-KVGLVAW 87
            A+  KAR+WMLR LRDGL TS+DL+L A KRAVPLLLA+ DSP G  D V + LI+D++ R+A L  SG R   D K GL A+
Sbjct: 2722 AASNKARVWMLRALRDGLHTSEDLELAAGKRAVPLLLAMADSPVGNGDAVIQELIVDILGRVASLERSGARKETDDKEGLGAY 2804
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BLAST of mRNA_S-ischiensis_contig8.19695.1 vs. uniprot
Match: D7G8A9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A9_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 4.860e-15
Identity = 42/69 (60.87%), Postives = 53/69 (76.81%), Query Frame = 0 
Query:    6 ASRAKARLWMLRTLRDGLRTSQDLDLVAAKRAVPLLLALFDSPSGEVDGVCRGLILDVVCRIAELPSSG 74
            A+  KAR+WMLR LRDGLRTS+DL+L A KRAVPLLLA+ DSP G  D V + LI+D++ R+A L + G
Sbjct: 2092 AASNKARVWMLRALRDGLRTSEDLELAAGKRAVPLLLAMADSPVGNGDVVIQELIVDILGRVASLEALG 2160
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19695.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K182_9PHAE9.030e-1757.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8A9_ECTSI4.860e-1560.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032436Nucleolar pre-ribosomal-associated protein 1, C-terminal domainPFAMPF16201NopRA1coord: 7..87
e-value: 4.2E-14
score: 52.6
IPR039844Nucleolar pre-ribosomal-associated protein 1PANTHERPTHR13500NUCLEOLAR PRERIBOSOMAL-ASSOCIATED PROTEIN 1coord: 9..107

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3220668..3222700 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19695.1mRNA_S-ischiensis_contig8.19695.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig8 3220658..3222700 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig8.19695.1 ID=prot_S-ischiensis_contig8.19695.1|Name=mRNA_S-ischiensis_contig8.19695.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=177bp
MHAEAASRAKARLWMLRTLRDGLRTSQDLDLVAAKRAVPLLLALFDSPSG
EVDGVCRGLILDVVCRIAELPSSGPRYLLDKVGLVAWCRLILGRVGAGVA
TPTAAKSSSGCRPGPDRSSGNGGGGERGGGRGARREPSRASAATAAASAL
PAALQARMLCLLRGLLRSGLALAPRPP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032436NopRA1_C
IPR039844URB1