prot_S-ischiensis_contig8.19648.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig8.19648.1
Unique Nameprot_S-ischiensis_contig8.19648.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length383
Homology
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BLAST of mRNA_S-ischiensis_contig8.19648.1 vs. uniprot
Match: A0A3L6EZR8_MAIZE (E3 ubiquitin-protein ligase RING1 n=1 Tax=Zea mays TaxID=4577 RepID=A0A3L6EZR8_MAIZE)

HSP 1 Score: 55.5 bits (132), Expect = 1.130e-5
Identity = 23/38 (60.53%), Postives = 26/38 (68.42%), Query Frame = 0 
Query:   66 RAATLPCRHRFHARCILRWLVSSASCPTCRLDLSATSD 103
            RA  +PCRHRFHA CI+ WL   +SCP CR  L AT D
Sbjct:  110 RAREMPCRHRFHANCIVPWLEMHSSCPVCRFQLPATDD 147
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19648.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3L6EZR8_MAIZE1.130e-560.53E3 ubiquitin-protein ligase RING1 n=1 Tax=Zea mays... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 12..94
e-value: 0.0089
score: 25.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 70..95
score: 9.303
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 57..110
e-value: 1.4E-11
score: 45.4
IPR024766Zinc finger, RING-H2-typePFAMPF12678zf-rbx1coord: 70..95
e-value: 1.3E-8
score: 35.0
NoneNo IPR availablePANTHERPTHR15710:SF9coord: 64..115
NoneNo IPR availablePANTHERPTHR15710E3 UBIQUITIN-PROTEIN LIGASE PRAJAcoord: 64..115
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 67..100

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2838910..2841032 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19648.1mRNA_S-ischiensis_contig8.19648.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig8 2838910..2841033 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig8.19648.1 ID=prot_S-ischiensis_contig8.19648.1|Name=mRNA_S-ischiensis_contig8.19648.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=383bp
GGGGGLDGHRAARVCSKGGDGGGGGDSHGSSSSDSLSAGPWPEVPWHPGG
RGRGAGAARGSSELGRAATLPCRHRFHARCILRWLVSSASCPTCRLDLSA
TSDATADLASPARARSPPSPAAGAAGNSASQLPSASGSGGGGGNGGDGDG
GGPGGGPGTLGGGSADSDIQDCPLRLHSGCDSEEIAGAARAASSELSGPA
RGGLRQPEAAGDSERLVAQGVPAVAPLGRGRRAARGVSGLGPCSSGASLS
SPDSNSASGGAEPAELNPEDATAPADRQRESGPQFARPGPALAGLEAAQP
GPAPGPGSEHEPESCDTQPEGASLSAAQLLTRHEAASAAAAAAGGRLCPG
ELGEVMVAWDSGDDEPESLVVAPQSESGEDRLG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR024766Znf_RING_H2