mRNA_S-ischiensis_contig8.19648.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19648.1
Unique NamemRNA_S-ischiensis_contig8.19648.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19648.1 vs. uniprot
Match: A0A3L6EZR8_MAIZE (E3 ubiquitin-protein ligase RING1 n=1 Tax=Zea mays TaxID=4577 RepID=A0A3L6EZR8_MAIZE)

HSP 1 Score: 55.5 bits (132), Expect = 1.130e-5
Identity = 23/38 (60.53%), Postives = 26/38 (68.42%), Query Frame = 1 
Query:  196 RAATLPCRHRFHARCILRWLVSSASCPTCRLDLSATSD 309
            RA  +PCRHRFHA CI+ WL   +SCP CR  L AT D
Sbjct:  110 RAREMPCRHRFHANCIVPWLEMHSSCPVCRFQLPATDD 147
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3L6EZR8_MAIZE1.130e-560.53E3 ubiquitin-protein ligase RING1 n=1 Tax=Zea mays... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2838910..2841033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1152
Cds size1149
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817261.8063097-CDS-S-ischiensis_contig8:2838909..28391481622817261.8063097-CDS-S-ischiensis_contig8:2838909..2839148Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2838910..2839148 +
1695740978.060937-CDS-S-ischiensis_contig8:2838909..28391481695740978.060937-CDS-S-ischiensis_contig8:2838909..2839148Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2838910..2839148 +
1622817261.817696-CDS-S-ischiensis_contig8:2840122..28410321622817261.817696-CDS-S-ischiensis_contig8:2840122..2841032Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2840123..2841032 +
1695740978.0729034-CDS-S-ischiensis_contig8:2840122..28410321695740978.0729034-CDS-S-ischiensis_contig8:2840122..2841032Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2840123..2841032 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19648.1prot_S-ischiensis_contig8.19648.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2838910..2841032 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19648.1

>prot_S-ischiensis_contig8.19648.1 ID=prot_S-ischiensis_contig8.19648.1|Name=mRNA_S-ischiensis_contig8.19648.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=383bp
GGGGGLDGHRAARVCSKGGDGGGGGDSHGSSSSDSLSAGPWPEVPWHPGG
RGRGAGAARGSSELGRAATLPCRHRFHARCILRWLVSSASCPTCRLDLSA
TSDATADLASPARARSPPSPAAGAAGNSASQLPSASGSGGGGGNGGDGDG
GGPGGGPGTLGGGSADSDIQDCPLRLHSGCDSEEIAGAARAASSELSGPA
RGGLRQPEAAGDSERLVAQGVPAVAPLGRGRRAARGVSGLGPCSSGASLS
SPDSNSASGGAEPAELNPEDATAPADRQRESGPQFARPGPALAGLEAAQP
GPAPGPGSEHEPESCDTQPEGASLSAAQLLTRHEAASAAAAAAGGRLCPG
ELGEVMVAWDSGDDEPESLVVAPQSESGEDRLG
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mRNA from alignment at S-ischiensis_contig8:2838910..2841033+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19648.1 ID=mRNA_S-ischiensis_contig8.19648.1|Name=mRNA_S-ischiensis_contig8.19648.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2124bp|location=Sequence derived from alignment at S-ischiensis_contig8:2838910..2841033+ (Schizocladia ischiensis KU_0333)
GGCGGCGGCGGGGGTTTGGACGGTCACAGGGCCGCCCGTGTCTGCAGCAA
AGGGGGCGACGGCGGCGGCGGCGGCGACAGCCATGGCAGCTCTTCCAGCG
ACAGTTTGAGTGCTGGGCCGTGGCCCGAGGTGCCGTGGCACCCAGGTGGT
CGCGGCCGAGGAGCGGGCGCTGCGCGGGGCAGCTCCGAGTTGGGGAGGGC
GGCGACGCTGCCGTGCCGGCACCGCTTTCACGCGCGCTGGTAGGTTTGTT
GCCCCTTTCGACGCTTAGAGGGTGACTCGGACGGTACACTGATGTGTTGT
TGTGATGTGACGTGATGTGTAGAGCACTCTACCGAGCTGTAAATTTTGAC
ATGACATCGTACTTCATACTTCGTACTTCAAAGTATATATATAGTTCGCG
AAGTATATACTACGTGGTATTATATATTAGTGTCCCATTGTCCTTAGCCC
TTTTACCCCTGCTAAATTGGACTTACTTCATACACACTAAAACCCTATGA
CTATGCGGACCCCAGGGGTAAAAGGGTTAACAGGTCCCGTTGTCCTCAAA
CTTGAAGGGTTTTAAACCTTTGTTGAGGAGGACCCGGGTGGTAGAGTACA
CTGACGCCTTGCGAACGCCATGTGCGAGCGAGTTCTGGATTGCCATTGTC
AAGATTACTATCATCACGCAAGCTGCAAGAGCGCCAGTGGGGCGATACAA
CGTGATGTGATGTGATGTCCTGTCTAATTCGCTGTACTTAGTCGTAAATC
ACATCACATCACCTCACACCGAAGCTACCATGAGGCAAGGTGCAAAAGAC
AAGAGCGCCAGTGGTGCGATACGACGTGATGTGGTGTGATGTGCTGTCTA
ATTCACGGTACTTCGTTGCACATCACATCACATCACATTGAAGTTACCGT
GAGGTAAGGTGAAGAAGTCAAGAGCGCTGATTCGTGTCGTTCGCTGTGAT
TCTGCTCGCGAGCTGTGGGGCCCCTTGAACTGAAACGAATGCATCTCCTC
GCCCATACTGCCGGGTATTTAGGATTGCTGAAGTACTCGTAAGCGAGTAC
ATATTTGGAACCCGGGCCCCCATTGCCTCACCCTTGGATAGGTTGCACTT
CGAAGTATAGTACTGTAGAGCTATATTACATATTTATATCAGTGACTCGC
GACTCCAATTGGCCTACCCCCCCCCCCCGCCCCCCGTCCCCTTGCCCCAC
CACCCCGGCGCAGCATCCTCCGCTGGCTTGTGAGCAGCGCCTCTTGCCCA
ACCTGCCGTCTGGACCTATCCGCCACCAGTGATGCCACGGCAGACCTTGC
CTCCCCCGCCCGGGCCCGGAGCCCGCCCAGCCCGGCAGCGGGCGCCGCAG
GCAACTCAGCATCCCAGCTACCCTCCGCGTCAGGCAGCGGCGGCGGCGGA
GGCAACGGCGGCGATGGCGATGGCGGCGGCCCGGGTGGCGGCCCGGGCAC
ACTCGGAGGCGGCAGTGCTGACTCAGACATTCAAGACTGTCCCCTCAGGC
TCCACTCAGGCTGCGACTCGGAAGAAATCGCGGGTGCCGCCCGGGCCGCC
TCGTCGGAGCTGTCGGGGCCGGCCCGTGGGGGACTCCGCCAGCCTGAGGC
CGCCGGTGACTCGGAACGGCTCGTGGCACAAGGGGTGCCAGCTGTGGCCC
CCCTGGGCCGGGGGAGGAGGGCGGCCCGGGGGGTTTCCGGCCTGGGCCCG
TGTTCCTCTGGGGCTAGCCTGAGTAGCCCGGACTCCAACTCTGCCTCGGG
GGGGGCAGAACCGGCGGAGTTGAACCCGGAGGATGCCACAGCACCTGCAG
ACAGGCAGCGCGAGAGCGGTCCGCAGTTTGCCCGGCCCGGGCCGGCACTG
GCAGGCTTGGAAGCCGCTCAGCCTGGCCCGGCGCCTGGGCCTGGGTCCGA
GCATGAGCCAGAGTCGTGCGACACACAGCCTGAGGGTGCGAGCCTGAGCG
CCGCGCAGTTGTTGACGCGGCATGAGGCTGCCAGTGCGGCGGCCGCAGCG
GCGGGAGGAAGGCTCTGCCCGGGCGAACTTGGAGAGGTGATGGTTGCATG
GGACTCGGGGGATGATGAGCCTGAGTCGTTGGTGGTCGCGCCGCAGTCTG
AGTCGGGGGAGGACAGACTCGGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2838910..2841033+

>mRNA_S-ischiensis_contig8.19648.1 ID=mRNA_S-ischiensis_contig8.19648.1|Name=mRNA_S-ischiensis_contig8.19648.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2298bp|location=Sequence derived from alignment at S-ischiensis_contig8:2838910..2841033+ (Schizocladia ischiensis KU_0333)
GGCGGCGGCGGGGGTTTGGACGGTCACAGGGCCGCCCGTGTCTGCAGCAA
AGGGGGCGACGGCGGCGGCGGCGGCGACAGCCATGGCAGCTCTTCCAGCG
ACAGTTTGAGTGCTGGGCCGTGGCCCGAGGTGCCGTGGCACCCAGGTGGT
CGCGGCCGAGGAGCGGGCGCTGCGCGGGGCAGCTCCGAGTTGGGGAGGGC
GGCGACGCTGCCGTGCCGGCACCGCTTTCACGCGCGCTGGGCGGCGGCGG
GGGTTTGGACGGTCACAGGGCCGCCCGTGTCTGCAGCAAAGGGGGCGACG
GCGGCGGCGGCGGCGACAGCCATGGCAGCTCTTCCAGCGACAGTTTGAGT
GCTGGGCCGTGGCCCGAGGTGCCGTGGCACCCAGGTGGTCGCGGCCGAGG
AGCGGGCGCTGCGCGGGGCAGCTCCGAGTTGGGGAGGGCGGCGACGCTGC
CGTGCCGGCACCGCTTTCACGCGCGCTGCATCCTCCGCTGGCTTGTGAGC
AGCGCCTCTTGCCCAACCTGCCGTCTGGACCTATCCGCCACCAGTGATGC
CACGGCAGACCTTGCCTCCCCCGCCCGGGCCCGGAGCCCGCCCAGCCCGG
CAGCGGGCGCCGCAGGCAACTCAGCATCCCAGCTACCCTCCGCGTCAGGC
AGCGGCGGCGGCGGAGGCAACGGCGGCGATGGCGATGGCGGCGGCCCGGG
TGGCGGCCCGGGCACACTCGGAGGCGGCAGTGCTGACTCAGACATTCAAG
ACTGTCCCCTCAGGCTCCACTCAGGCTGCGACTCGGAAGAAATCGCGGGT
GCCGCCCGGGCCGCCTCGTCGGAGCTGTCGGGGCCGGCCCGTGGGGGACT
CCGCCAGCCTGAGGCCGCCGGTGACTCGGAACGGCTCGTGGCACAAGGGG
TGCCAGCTGTGGCCCCCCTGGGCCGGGGGAGGAGGGCGGCCCGGGGGGTT
TCCGGCCTGGGCCCGTGTTCCTCTGGGGCTAGCCTGAGTAGCCCGGACTC
CAACTCTGCCTCGGGGGGGGCAGAACCGGCGGAGTTGAACCCGGAGGATG
CCACAGCACCTGCAGACAGGCAGCGCGAGAGCGGTCCGCAGTTTGCCCGG
CCCGGGCCGGCACTGGCAGGCTTGGAAGCCGCTCAGCCTGGCCCGGCGCC
TGGGCCTGGGTCCGAGCATGAGCCAGAGTCGTGCGACACACAGCCTGAGG
GTGCGAGCCTGAGCGCCGCGCAGTTGTTGACGCGGCATGAGGCTGCCAGT
GCGGCGGCCGCAGCGGCGGGAGGAAGGCTCTGCCCGGGCGAACTTGGAGA
GGTGATGGTTGCATGGGACTCGGGGGATGATGAGCCTGAGTCGTTGGTGG
TCGCGCCGCAGTCTGAGTCGGGGGAGGACAGACTCGGGCATCCTCCGCTG
GCTTGTGAGCAGCGCCTCTTGCCCAACCTGCCGTCTGGACCTATCCGCCA
CCAGTGATGCCACGGCAGACCTTGCCTCCCCCGCCCGGGCCCGGAGCCCG
CCCAGCCCGGCAGCGGGCGCCGCAGGCAACTCAGCATCCCAGCTACCCTC
CGCGTCAGGCAGCGGCGGCGGCGGAGGCAACGGCGGCGATGGCGATGGCG
GCGGCCCGGGTGGCGGCCCGGGCACACTCGGAGGCGGCAGTGCTGACTCA
GACATTCAAGACTGTCCCCTCAGGCTCCACTCAGGCTGCGACTCGGAAGA
AATCGCGGGTGCCGCCCGGGCCGCCTCGTCGGAGCTGTCGGGGCCGGCCC
GTGGGGGACTCCGCCAGCCTGAGGCCGCCGGTGACTCGGAACGGCTCGTG
GCACAAGGGGTGCCAGCTGTGGCCCCCCTGGGCCGGGGGAGGAGGGCGGC
CCGGGGGGTTTCCGGCCTGGGCCCGTGTTCCTCTGGGGCTAGCCTGAGTA
GCCCGGACTCCAACTCTGCCTCGGGGGGGGCAGAACCGGCGGAGTTGAAC
CCGGAGGATGCCACAGCACCTGCAGACAGGCAGCGCGAGAGCGGTCCGCA
GTTTGCCCGGCCCGGGCCGGCACTGGCAGGCTTGGAAGCCGCTCAGCCTG
GCCCGGCGCCTGGGCCTGGGTCCGAGCATGAGCCAGAGTCGTGCGACACA
CAGCCTGAGGGTGCGAGCCTGAGCGCCGCGCAGTTGTTGACGCGGCATGA
GGCTGCCAGTGCGGCGGCCGCAGCGGCGGGAGGAAGGCTCTGCCCGGGCG
AACTTGGAGAGGTGATGGTTGCATGGGACTCGGGGGATGATGAGCCTGAG
TCGTTGGTGGTCGCGCCGCAGTCTGAGTCGGGGGAGGACAGACTCGGG
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