prot_S-ischiensis_contig8.19647.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig8.19647.1
Unique Nameprot_S-ischiensis_contig8.19647.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length188
Homology
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BLAST of mRNA_S-ischiensis_contig8.19647.1 vs. uniprot
Match: D7G3J8_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3J8_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 3.610e-26
Identity = 76/176 (43.18%), Postives = 91/176 (51.70%), Query Frame = 0 
Query:    4 EAELLIKRAVLIQGRCLGLGHPAVASSMSTMASLYLKQGRLSKXXXXXXXXXXXXXXXXXXXXXXXXXXXX--GLAATVLEGAGPDWLERVREGADWPARAPWEGLDWEGRVREAYVLVDRAYAIASSTRGPDHETSRDLLDALHSLRVLQWEGHGDPRPAPMAVLLAVQNGRWEP 177
            +AE +IKRAVLIQGR LGL HPAVASSM  MA LY +QGRL++                              G A  VL GAG DWL                     GR  EA+ LVD+AY IASS  G D  +SR LL+AL  +R  Q +G GDP+PA  A++  V  GRW+P
Sbjct:  545 KAEEMIKRAVLIQGRHLGLRHPAVASSMRAMAELYRRQGRLAEAEPLFRRAIGIWELSRGGGGMDSDAIAALHGTAHCVLAGAGADWL---------------------GRFEEAFALVDQAYRIASSHPGND-ASSRLLLEALRMIRSRQRQGRGDPQPASAAIMEGVWTGRWDP 698
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19647.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3J8_ECTSI3.610e-2643.18TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 2..154
e-value: 2.3E-22
score: 81.6
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 4..79
NoneNo IPR availablePFAMPF13374TPR_10coord: 27..67
e-value: 2.1E-10
score: 40.1
NoneNo IPR availablePANTHERPTHR45783FAMILY NOT NAMEDcoord: 3..80
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 28..61
score: 8.054

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2835036..2838304 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19647.1mRNA_S-ischiensis_contig8.19647.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig8 2835036..2838304 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig8.19647.1 ID=prot_S-ischiensis_contig8.19647.1|Name=mRNA_S-ischiensis_contig8.19647.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=188bp
MAAEAELLIKRAVLIQGRCLGLGHPAVASSMSTMASLYLKQGRLSKAEPL
FRRAIGIWEKALGTSHPVLAPALHGLAATVLEGAGPDWLERVREGADWPA
RAPWEGLDWEGRVREAYVLVDRAYAIASSTRGPDHETSRDLLDALHSLRV
LQWEGHGDPRPAPMAVLLAVQNGRWEPPPPPPSPPPPP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR019734TPR_repeat