prot_S-ischiensis_contig8.19645.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig8.19645.1
Unique Nameprot_S-ischiensis_contig8.19645.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length231
Homology
BLAST of mRNA_S-ischiensis_contig8.19645.1 vs. uniprot
Match: D7FL72_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL72_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 2.780e-43
Identity = 75/155 (48.39%), Postives = 107/155 (69.03%), Query Frame = 0
Query:   69 LKSF-GQQQNSQGSGRGVIDFRFNTIKTGGFKLWLFFYLVGQAKSSNNELPWTVRETGDGIRLFIGGQGEGQQEYDGVLDFRWGEDPSPFFAVDRFDPDEARPYPGELLALNKVVDAMTDVYSEPNVTEDQRLFTFQDGQVTQLAAAKAKLADMA 222
            + SF  Q     G G GVID +F  +KTGGFK++L F+L+GQ ++ +N+ P++VR+T +GIR+ IG + +   +++GVLD  WG +P PFF VDR D +E  PYPGEL  LNK++DA+ DV  E +V + Q+LF F++G+  QLA  KA LA MA
Sbjct:   13 MSSFDAQSAPPSGPGAGVIDLQFQNLKTGGFKVFLLFFLLGQGRAKDNDTPFSVRDTEEGIRVLIGDETKNDSQWEGVLDLSWGVEPRPFFRVDRIDVNEVIPYPGELYILNKLLDAIIDVNGEQSVEDHQKLFMFREGEQNQLAETKAMLAGMA 167          
BLAST of mRNA_S-ischiensis_contig8.19645.1 vs. uniprot
Match: A0A835Z0B5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0B5_9STRA)

HSP 1 Score: 149 bits (376), Expect = 4.810e-41
Identity = 97/221 (43.89%), Postives = 126/221 (57.01%), Query Frame = 0
Query:   23 AFVTPCGWRP-APSILPARRASPTRLVVGGATSAR--CRAPLAMGWFDEL------KSFGQQQNS----------QGSGRGVIDFRFNTIKTGGFKLWLFFYLVGQAKSSNNELPWTVRETGDGIRLFIGGQGEGQ--QEYDGVLDFRWGEDPSPFFAVDRFDPDEARPYPGELLALNKVVDAMTDVYSEPNVTEDQRLFTFQDGQVTQLAAAKAKLADMA 222
            AF  P G RP A   L    ++ T  V  G T+AR    APLAM WFD+L      +  G   NS          Q  G  V+D RF T+K GGFK+WLFF+L+ + K       +TVRET DGIR F+ G+  G   +EY+GVLD  WG DP+PFF VDR DP+E  PYPGEL  L ++VDAM ++  +       +LFTF D   + ++ AKAKL+ +A
Sbjct:   19 AFHVPSGARPKAAEHLTRSISAQTHGVYAGVTAARRVTPAPLAMSWFDDLFTRSRMEGAGNNSNSVQDVEVVGEVQKPGERVLDLRFATLKKGGFKVWLFFWLLAEGKGDPKN-QFTVRETADGIRCFLTGEQSGASVKEYNGVLDISWGTDPAPFFRVDRIDPNEEEPYPGELEVLCRIVDAMAELVQDDVTAGADKLFTF-DTSRSDVSDAKAKLSALA 237          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19645.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FL72_ECTSI2.780e-4348.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z0B5_9STRA4.810e-4143.89Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..230
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..23
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..23
score: 0.603

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2818841..2824217 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19645.1mRNA_S-ischiensis_contig8.19645.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig8 2818796..2825985 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig8.19645.1 ID=prot_S-ischiensis_contig8.19645.1|Name=mRNA_S-ischiensis_contig8.19645.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=231bp
MKRPHAAAALGSAMLGVCCVGHAFVTPCGWRPAPSILPARRASPTRLVVG
GATSARCRAPLAMGWFDELKSFGQQQNSQGSGRGVIDFRFNTIKTGGFKL
WLFFYLVGQAKSSNNELPWTVRETGDGIRLFIGGQGEGQQEYDGVLDFRW
GEDPSPFFAVDRFDPDEARPYPGELLALNKVVDAMTDVYSEPNVTEDQRL
FTFQDGQVTQLAAAKAKLADMAAAAARGGK*
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