prot_S-ischiensis_contig8.19613.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig8.19613.1
Unique Nameprot_S-ischiensis_contig8.19613.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length261
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig8.19613.1 vs. uniprot
Match: A0A6H5JG98_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG98_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 4.170e-21
Identity = 73/188 (38.83%), Postives = 108/188 (57.45%), Query Frame = 0 
Query:    2 AVMGWIFRPVLRRLKARPAEELVPLLVVLCGGLAVLALVVVALGAYTIVDTHWVSPLVWLMWTAIVTICLGSLLLLVALVGCGAALRRNRVTLMLFSGITGAVAATLAALAALFFALASGDDFVSDLSWSTIRKGLDADVTKEAFLADAKDNLVLLGSGASVLAAY-LFAPCLAGAALRTRLKSNEDK 188
            AV+GW ++PVLRRL  +  ++LV  L       A LA+ VV  GA+++      + ++ L W A+  +CLGSLLLL+AL+G   A  RNR +L+ F  + GAVA  +        ALA G   +SDL+W  I    +   TKE FL+ A+  LVLLGS   VLA + +  PCL  + L  ++++ E++
Sbjct:  353 AVLGWCYQPVLRRLNQKGVDKLVRWLCFANAVSASLAVAVVVTGAFSLSR----ATVLGLQWCAVTAVCLGSLLLLLALLGAAGARLRNRFSLLGFVVLEGAVAVGMLLSGTWCLALAGGSATLSDLTWEAINNEREMSGTKEDFLSGAQSRLVLLGSTGLVLALFSVVGPCLLASVLLGKIRNMEEE 536
[Close]
BLAST of mRNA_S-ischiensis_contig8.19613.1 vs. uniprot
Match: D8LG14_ECTSI (CRAL/TRIO, N-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG14_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 2.680e-12
Identity = 53/134 (39.55%), Postives = 78/134 (58.21%), Query Frame = 0 
Query:    2 AVMGWIFRPVLRRLKARPAEELVPLLVVLCGGLAVLALVVVALGAYTIVDTHWVSPLVWLMWTAIVTICLGSLLLLVALVGCGAALRRNRVTLMLFSGITGAVAATLAALAALFFALASGDDFVSDLSWSTIRK 135
            AV+GW ++PVLRRL  +  ++LV  L       A LA+ VV  GA+++      + ++ L W A+  +CLGSLLLL+AL+G   A  RNR +L+ F+ + GAVA  +        ALA G   +SDL+W  + K
Sbjct:  538 AVLGWCYQPVLRRLNQKGVDKLVRWLCFANAVSASLAVAVVVTGAFSLSR----ATVLGLQWCAVTAVCLGSLLLLLALLGAAGARLRNRFSLLGFAVLEGAVAVGMLLSGTWCLALAGGSATLSDLTWEAMNK 667
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19613.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JG98_9PHAE4.170e-2138.83CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
D8LG14_ECTSI2.680e-1239.55CRAL/TRIO, N-terminus family protein n=1 Tax=Ectoc... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 181..208
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..22
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 61..87
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 23..49
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 179..261
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 50..60
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 94..119
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 120..153
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 88..93
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 154..178
NoneNo IPR availableTMHMMTMhelixcoord: 94..116
NoneNo IPR availableTMHMMTMhelixcoord: 23..45
NoneNo IPR availableTMHMMTMhelixcoord: 60..82
NoneNo IPR availableTMHMMTMhelixcoord: 156..178

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2538133..2540149 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19613.1mRNA_S-ischiensis_contig8.19613.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig8 2538112..2540149 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig8.19613.1 ID=prot_S-ischiensis_contig8.19613.1|Name=mRNA_S-ischiensis_contig8.19613.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=261bp
MAVMGWIFRPVLRRLKARPAEELVPLLVVLCGGLAVLALVVVALGAYTIV
DTHWVSPLVWLMWTAIVTICLGSLLLLVALVGCGAALRRNRVTLMLFSGI
TGAVAATLAALAALFFALASGDDFVSDLSWSTIRKGLDADVTKEAFLADA
KDNLVLLGSGASVLAAYLFAPCLAGAALRTRLKSNEDKERQEAEVRAAAE
EAFFMEEEDDNDDNGRGGEDGEEDGGGGDDKQRRRRRRRRRQRQRRQQWW
RQQRRREEWEW
back to top