mRNA_S-ischiensis_contig8.19613.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19613.1
Unique NamemRNA_S-ischiensis_contig8.19613.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19613.1 vs. uniprot
Match: A0A6H5JG98_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG98_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.090e-21
Identity = 74/190 (38.95%), Postives = 109/190 (57.37%), Query Frame = 1 
Query:   19 VMAVMGWIFRPVLRRLKARPAEELVPLLVVLCGGLAVLALVVVALGAYTIVDTHWVSPLVWLMWTAIVTICLGSLLLLVALVGCGAALRRNRVTLMLFSGITGAVAATLAALAALFFALASGDDFVSDLSWSTIRKGLDADVTKEAFLADAKDNLVLLGSGASVLAAY-LFAPCLAGAALRTRLKSNEDK 585
            V AV+GW ++PVLRRL  +  ++LV  L       A LA+ VV  GA+++      + ++ L W A+  +CLGSLLLL+AL+G   A  RNR +L+ F  + GAVA  +        ALA G   +SDL+W  I    +   TKE FL+ A+  LVLLGS   VLA + +  PCL  + L  ++++ E++
Sbjct:  351 VSAVLGWCYQPVLRRLNQKGVDKLVRWLCFANAVSASLAVAVVVTGAFSLSR----ATVLGLQWCAVTAVCLGSLLLLLALLGAAGARLRNRFSLLGFVVLEGAVAVGMLLSGTWCLALAGGSATLSDLTWEAINNEREMSGTKEDFLSGAQSRLVLLGSTGLVLALFSVVGPCLLASVLLGKIRNMEEE 536
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BLAST of mRNA_S-ischiensis_contig8.19613.1 vs. uniprot
Match: D8LG14_ECTSI (CRAL/TRIO, N-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG14_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 6.890e-13
Identity = 54/136 (39.71%), Postives = 79/136 (58.09%), Query Frame = 1 
Query:   19 VMAVMGWIFRPVLRRLKARPAEELVPLLVVLCGGLAVLALVVVALGAYTIVDTHWVSPLVWLMWTAIVTICLGSLLLLVALVGCGAALRRNRVTLMLFSGITGAVAATLAALAALFFALASGDDFVSDLSWSTIRK 426
            V AV+GW ++PVLRRL  +  ++LV  L       A LA+ VV  GA+++      + ++ L W A+  +CLGSLLLL+AL+G   A  RNR +L+ F+ + GAVA  +        ALA G   +SDL+W  + K
Sbjct:  536 VSAVLGWCYQPVLRRLNQKGVDKLVRWLCFANAVSASLAVAVVVTGAFSLSR----ATVLGLQWCAVTAVCLGSLLLLLALLGAAGARLRNRFSLLGFAVLEGAVAVGMLLSGTWCLALAGGSATLSDLTWEAMNK 667
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JG98_9PHAE1.090e-2138.95CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
D8LG14_ECTSI6.890e-1339.71CRAL/TRIO, N-terminus family protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2538112..2540149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue8.4e-12
Seed eggNOG ortholog2880.D8LG14
KEGG koko:K19996
EggNOG free text desc.cholestenol delta-isomerase activity
EggNOG OGsKOG1471@1,KOG1471@2759,KOG4826@1,KOG4826@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categorysignal anchor
Exons3
Model size805
Cds size783
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19613.1prot_S-ischiensis_contig8.19613.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2538133..2540149 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817292.32176-UTR-S-ischiensis_contig8:2538111..25381321622817292.32176-UTR-S-ischiensis_contig8:2538111..2538132Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2538112..2538132 +
1695741001.4630907-UTR-S-ischiensis_contig8:2538111..25381321695741001.4630907-UTR-S-ischiensis_contig8:2538111..2538132Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2538112..2538132 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817292.3328354-CDS-S-ischiensis_contig8:2538132..25382931622817292.3328354-CDS-S-ischiensis_contig8:2538132..2538293Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2538133..2538293 +
1695741001.4754932-CDS-S-ischiensis_contig8:2538132..25382931695741001.4754932-CDS-S-ischiensis_contig8:2538132..2538293Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2538133..2538293 +
1622817292.3440077-CDS-S-ischiensis_contig8:2539199..25393311622817292.3440077-CDS-S-ischiensis_contig8:2539199..2539331Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2539200..2539331 +
1695741001.485249-CDS-S-ischiensis_contig8:2539199..25393311695741001.485249-CDS-S-ischiensis_contig8:2539199..2539331Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2539200..2539331 +
1622817292.355316-CDS-S-ischiensis_contig8:2539659..25401491622817292.355316-CDS-S-ischiensis_contig8:2539659..2540149Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2539660..2540149 +
1695741001.4949741-CDS-S-ischiensis_contig8:2539659..25401491695741001.4949741-CDS-S-ischiensis_contig8:2539659..2540149Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2539660..2540149 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19613.1

>prot_S-ischiensis_contig8.19613.1 ID=prot_S-ischiensis_contig8.19613.1|Name=mRNA_S-ischiensis_contig8.19613.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=261bp
MAVMGWIFRPVLRRLKARPAEELVPLLVVLCGGLAVLALVVVALGAYTIV
DTHWVSPLVWLMWTAIVTICLGSLLLLVALVGCGAALRRNRVTLMLFSGI
TGAVAATLAALAALFFALASGDDFVSDLSWSTIRKGLDADVTKEAFLADA
KDNLVLLGSGASVLAAYLFAPCLAGAALRTRLKSNEDKERQEAEVRAAAE
EAFFMEEEDDNDDNGRGGEDGEEDGGGGDDKQRRRRRRRRRQRQRRQQWW
RQQRRREEWEW
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mRNA from alignment at S-ischiensis_contig8:2538112..2540149+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19613.1 ID=mRNA_S-ischiensis_contig8.19613.1|Name=mRNA_S-ischiensis_contig8.19613.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2038bp|location=Sequence derived from alignment at S-ischiensis_contig8:2538112..2540149+ (Schizocladia ischiensis KU_0333)
CGGGCGGCGGGGGAGGGGGTGATGGCGGTGATGGGCTGGATTTTCCGGCC
CGTGCTTCGGCGGCTGAAGGCCAGGCCCGCGGAAGAGCTTGTGCCGCTGT
TGGTGGTGTTGTGTGGGGGTCTGGCGGTGCTAGCGTTGGTTGTGGTGGCG
CTGGGGGCCTACACCATCGTGGACACGCATTGGTGAGTGAGACACTCGGG
TGCTACAGTGTGTACTGTTTCCCTCTGTTTTTCGATTTACGGCGGTACTG
GGGGGACCTCCCACCCTGGCTCTGCCAGGGGAGGGAGGGGTCCTGCTCTG
TATCGACCGAGGCGCGTGGTCAATGGTCTCGGCACTACGGCAAGCACGAC
GTGAGTACATATACGTAGTATACTGTGCTGTGTGTGTTGTAGGGTCTACA
GATGCGGGTGCTTGGAAGTATGTGTGTGCGGTGCTCATGTCGCGGTCTTT
TCGGGTCAGTTTCGTTACAGCAGCGCGAGTGGGCTGGTTAAGTGCTGCTC
CCTGACTACGTGCCTACCATGCTACACAGTACTTCATACTTGGCAGAAGT
TGGTGTGTCACTAAGCAAAGTGAGCACTGTGTAAGTACTTGCCAAGTACT
TCCTGCTTGTACCGTTGTACTCCCGGATGTACACTCATACGAATACTCCA
CAATGTAGAGTACCCGTACAAGTAGAGTCCTCGGAGGTACCGAAGTACTG
TGCTTCAACTACACACGCCTCACCTCATCGCGTGTCTCAAGTACCTTGAG
TGCTTCCATGCTTGCCGTACCCCAGAGACCATCGCCTCACGCGCCCCACT
ATCTCTTCCGAGTCCGGAGCCCCCATGCTGCTCGGTATGCTCTATTGTGC
CCAGGCTTTCATGTTGCACTGCATGTTATGCACGTGGCACTGGCCGACTG
CCCTTGCAGATAGCCGCCGGCCTCGCTCTCTCTCCCCCACCCCTACCTAT
GGCCCTCCCTCTCTTAACTCTCTCCCTCTGTCCCTCCCTCTCTTGAACCC
TCACCCCACCCCTCCCTCCGCCCCTCCCTCTCTTGAACTCTCTCTGTCCC
TCCCTCCCGCCCCCCCCTCTCTTCCTCCCCCATCCCAGGGTGAGTCCGCT
GGTGTGGCTCATGTGGACGGCGATCGTCACCATCTGCCTGGGGTCCCTCC
TGCTCTTGGTAGCGCTGGTGGGGTGCGGGGCGGCGCTGAGACGGAACCGC
GTCACGCTCATGCTCTTCAGGTCTGTCTGCGCCGGGGTACCGCTTGGTTG
CCGTGCCGTACCATACGGCACAGTACAGTACAGTACAGTGCGGTGTACGA
GTACAGTACAGTAGAGTACTCGAGTACTCGAAGTAGTACTAGTAGTACTG
TCAAGACGATTCAAAATGGTACACACAACTCGACCACGCTACCGTTCCTA
GGGCACCATACCCCATCCGCCAGAACGTCAAACAGCAAGCACCACGTGAT
GACACGCCCATGCCCATGCCGTTCCGCTTCCGCCATTGCCACGCAACACA
GTCCACTGACTCCCAATTCCCAACTCCCCCCGGGCCGGGGCCCCTCAGCG
GCATCACCGGGGCGGTGGCGGCCACGCTCGCCGCACTCGCCGCCCTCTTC
TTCGCCCTCGCTTCCGGCGACGACTTTGTCTCCGACCTCTCCTGGAGCAC
CATCCGGAAGGGCCTGGACGCCGACGTCACCAAGGAGGCGTTTCTCGCCG
ACGCGAAAGACAACCTCGTCCTGCTCGGGTCCGGCGCCTCCGTCCTCGCC
GCCTACCTCTTCGCCCCGTGCCTCGCGGGCGCCGCGCTGCGCACCCGCCT
CAAGTCCAACGAGGACAAGGAGCGCCAGGAGGCCGAGGTGCGGGCCGCGG
CCGAGGAGGCGTTTTTCATGGAGGAAGAAGACGACAATGATGACAACGGC
CGCGGCGGCGAAGACGGCGAAGAAGACGGTGGAGGAGGAGATGACAAGCA
GCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCAGCGGCGGCAGCAGT
GGTGGCGGCAGCAGCGGCGGCGGGAGGAGTGGGAGTGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2538112..2540149+

>mRNA_S-ischiensis_contig8.19613.1 ID=mRNA_S-ischiensis_contig8.19613.1|Name=mRNA_S-ischiensis_contig8.19613.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1566bp|location=Sequence derived from alignment at S-ischiensis_contig8:2538112..2540149+ (Schizocladia ischiensis KU_0333)
ATGGCGGTGATGGGCTGGATTTTCCGGCCCGTGCTTCGGCGGCTGAAGGC
CAGGCCCGCGGAAGAGCTTGTGCCGCTGTTGGTGGTGTTGTGTGGGGGTC
TGGCGGTGCTAGCGTTGGTTGTGGTGGCGCTGGGGGCCTACACCATCGTG
GACACGCATTGATGGCGGTGATGGGCTGGATTTTCCGGCCCGTGCTTCGG
CGGCTGAAGGCCAGGCCCGCGGAAGAGCTTGTGCCGCTGTTGGTGGTGTT
GTGTGGGGGTCTGGCGGTGCTAGCGTTGGTTGTGGTGGCGCTGGGGGCCT
ACACCATCGTGGACACGCATTGGGTGAGTCCGCTGGTGTGGCTCATGTGG
ACGGCGATCGTCACCATCTGCCTGGGGTCCCTCCTGCTCTTGGTAGCGCT
GGTGGGGTGCGGGGCGGCGCTGAGACGGAACCGCGTCACGCTCATGCTCT
TCAGGGTGAGTCCGCTGGTGTGGCTCATGTGGACGGCGATCGTCACCATC
TGCCTGGGGTCCCTCCTGCTCTTGGTAGCGCTGGTGGGGTGCGGGGCGGC
GCTGAGACGGAACCGCGTCACGCTCATGCTCTTCAGCGGCATCACCGGGG
CGGTGGCGGCCACGCTCGCCGCACTCGCCGCCCTCTTCTTCGCCCTCGCT
TCCGGCGACGACTTTGTCTCCGACCTCTCCTGGAGCACCATCCGGAAGGG
CCTGGACGCCGACGTCACCAAGGAGGCGTTTCTCGCCGACGCGAAAGACA
ACCTCGTCCTGCTCGGGTCCGGCGCCTCCGTCCTCGCCGCCTACCTCTTC
GCCCCGTGCCTCGCGGGCGCCGCGCTGCGCACCCGCCTCAAGTCCAACGA
GGACAAGGAGCGCCAGGAGGCCGAGGTGCGGGCCGCGGCCGAGGAGGCGT
TTTTCATGGAGGAAGAAGACGACAATGATGACAACGGCCGCGGCGGCGAA
GACGGCGAAGAAGACGGTGGAGGAGGAGATGACAAGCAGCGGCGGCGGCG
GCGGCGGCGGCGGCGGCAGCGGCAGCGGCGGCAGCAGTGGTGGCGGCAGC
AGCGGCGGCGGGAGGAGTGGGAGTGGCGGCATCACCGGGGCGGTGGCGGC
CACGCTCGCCGCACTCGCCGCCCTCTTCTTCGCCCTCGCTTCCGGCGACG
ACTTTGTCTCCGACCTCTCCTGGAGCACCATCCGGAAGGGCCTGGACGCC
GACGTCACCAAGGAGGCGTTTCTCGCCGACGCGAAAGACAACCTCGTCCT
GCTCGGGTCCGGCGCCTCCGTCCTCGCCGCCTACCTCTTCGCCCCGTGCC
TCGCGGGCGCCGCGCTGCGCACCCGCCTCAAGTCCAACGAGGACAAGGAG
CGCCAGGAGGCCGAGGTGCGGGCCGCGGCCGAGGAGGCGTTTTTCATGGA
GGAAGAAGACGACAATGATGACAACGGCCGCGGCGGCGAAGACGGCGAAG
AAGACGGTGGAGGAGGAGATGACAAGCAGCGGCGGCGGCGGCGGCGGCGG
CGGCGGCAGCGGCAGCGGCGGCAGCAGTGGTGGCGGCAGCAGCGGCGGCG
GGAGGAGTGGGAGTGG
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