prot_S-ischiensis_contig8.19507.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-ischiensis_contig8.19507.1
Unique Name	prot_S-ischiensis_contig8.19507.1
Type	polypeptide
Organism	Schizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length	517

Homology

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BLAST of mRNA_S-ischiensis_contig8.19507.1 vs. uniprot
Match: D7FK51_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK51_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 3.900e-31
Identity = 75/131 (57.25%), Postives = 97/131 (74.05%), Query Frame = 0

Query:  249 ASVLPTLTLEKLGLGFNRIATLGVTAIMQAVLQTTSLTSVVLSGNSLETDAAKAIALALAQHRCTLQHLYLDHTSLGRAGEGHIAAGLLTNRALHLKTLTGFRLGAALGVMGLPGQMEVLTNDQALDHVRA 379
            A  LPTL LE L +GF+ + T GV A+MQA   + S TS+ LSGN+L+ +AAKAI  ALAQ RC+L+ LYLDHTSLGRA EG IA G+L+NR+L L TLTGFRLG++   +G+P Q+   +NDQAL+  +A
Sbjct:  470 AIALPTLGLETLDVGFSHVGTAGVAALMQATANSPSFTSLSLSGNALDAEAAKAIQAALAQPRCSLRCLYLDHTSLGRASEGFIANGVLSNRSLALVTLTGFRLGSSFARLGMPPQVANFSNDQALEQQKA 600

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BLAST of mRNA_S-ischiensis_contig8.19507.1 vs. uniprot
Match: A0A7S1YLQ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YLQ8_9STRA)

HSP 1 Score: 111 bits (278), Expect = 3.010e-22
Identity = 61/143 (42.66%), Postives = 98/143 (68.53%), Query Frame = 0

Query:  243 RGARLVASVLPTL-TLEKLGLGFNRIATLGVTAIMQAVLQTTSLTSVVLSGNSLETDAAKAIALALAQHRCTLQHLYLDHTSLGRAGEGHIAAGLLTNRALHLKTLTGFRLGAALGVMGLPGQMEVLTNDQALDHVRALRQLQ 384
            RGA+ VA++LP + TLE L +GFN I + G+ A+M+ V +T+ L S+ +SGN ++T +AKA+A ALA +R +L++LYLDH  +   G+ HI AG ++N  + L+ LTGFR+G  +  + +PG +E  TN+Q L+ +  + + Q
Sbjct:  244 RGAQHVANILPYIKTLEVLDVGFNSIKSHGMKALMKVVAETSHLVSLSVSGNPIDTGSAKAVAYALAYNR-SLKYLYLDHCDIQHEGQRHIVAGFVSNSGIALRKLTGFRIGPVIVTIEMPGALEHWTNEQVLNFIHLMWEKQ 385

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BLAST of mRNA_S-ischiensis_contig8.19507.1 vs. uniprot
Match: A0A6H5KVK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVK7_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 2.170e-19
Identity = 62/130 (47.69%), Postives = 78/130 (60.00%), Query Frame = 0

Query:  249 ASVLPTLTLEKLGLGFNRIATLGVTAIMQAVLQTTSLTSVVLSGNSLETDAAKAIALALAQHRCTLQHLYLDHTSLGRAGEGHIAAGLLTNRALHLKTLTGFRLGAALGVMGLPGQMEVLTNDQALDHVR 378
            A  LPTL LE L +GF+ + T GV A+MQA                           ALAQ RC+L+ L LDHTSLGRA EG IA G+L+NR+L L TLTGFRLG++   +G+P Q+   +NDQAL+ VR
Sbjct:  518 AIALPTLGLETLDVGFSHVGTAGVAALMQA---------------------------ALAQPRCSLRCLCLDHTSLGRASEGFIANGVLSNRSLALVTLTGFRLGSSFARLGMPPQVANFSNDQALEQVR 620

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BLAST of mRNA_S-ischiensis_contig8.19507.1 vs. uniprot
Match: A0A1Z5K171_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K171_FISSO)

HSP 1 Score: 91.7 bits (226), Expect = 9.380e-16
Identity = 55/141 (39.01%), Postives = 90/141 (63.83%), Query Frame = 0

Query:  243 RGARLVASVLPTLTLEKLGLGFNR-IATLGVTAIMQAVLQTTSLTSVVLSGNSLETDAAKAIALALAQHRCTLQHLYLDHTSLGRAGEGHIAAGLLTNRALHLKTLTGFRLGAALGVMGLPGQMEVLTNDQALDHVRALRQ 382
            RGA+L A  L ++ +E L L FNR I+T G+ A+M+ + +  SL S+ L+G  L+ +++KA++ ALA +  +LQ LYLD+ ++G A + HI AG+++N+   L+ +TGF +      +GLP   E  +NDQ L  +R + Q
Sbjct:  394 RGAQLCAVALTSIQMEVLDLSFNRNISTTGIKALMKNISENNSLRSLGLAGIHLDQNSSKALSYALA-YNMSLQTLYLDNCNVGYASQRHIVAGIVSNQRASLRLVTGFDIAPIAITLGLPRLPETWSNDQVLGFIRYMWQ 533

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BLAST of mRNA_S-ischiensis_contig8.19507.1 vs. uniprot
Match: A0A7S1VXR1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1VXR1_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.980e-14
Identity = 51/138 (36.96%), Postives = 77/138 (55.80%), Query Frame = 0

Query:  243 RGARLVASVLPTLTLEKLGLGFNRIATLGVTAIMQAVLQTTSLTSVVLSGNSLETDAAKAIALALAQHRCTLQHLYLDHTSLGRAGEGHIAAGLLTNRALHLKTLTGFRLGAALGVMGLPGQMEVLTNDQALDHVRAL 380
            RGA+L A VL ++ LE L LGFNRI T G+ A+M+++ +  +L S+ LSGN                         +D+ S+G A + HI AG+++N  L L+ +TGF +GA    +GLP  +E  TN+Q L  +R +
Sbjct:  218 RGAQLAAVVLTSVKLEVLDLGFNRITTGGIKALMKSLAENDTLLSLTLSGNPXX-XXXXXXXXXXXXXXXXXXXXXVDNCSVGYAAQRHITAGIVSNSQLSLRVITGFHIGAIAVTLGLPSALENWTNEQVLKFIRLM 354

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BLAST of mRNA_S-ischiensis_contig8.19507.1 vs. uniprot
Match: A0A1E7FR04_9STRA (RNI-like protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FR04_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 5.190e-14
Identity = 44/109 (40.37%), Postives = 77/109 (70.64%), Query Frame = 0

Query:  243 RGARLVASVLPTLTLEK-LGLGFNRIATLGVTAIMQAVLQTTSLTSVVLSGNSLETDAAKAIALALAQHRCTLQHLYLDHTSLGRAGEGHIAAGLLTNRALHLKTLTGF 350
            RGA  +A+++PT+ + K L +GFN+I   G+T +M+ + ++ +L S+ +SGN+++++AAK++A ALA + C+LQ ++L H S+G     HIAAG+++N    L  +TGF
Sbjct:  229 RGAHQMAAIIPTMKVFKILDVGFNKITASGLTVLMKTIAESQTLESLSVSGNAIDSNAAKSVAFALA-YNCSLQSIFLIHCSIGHEELRHIAAGIVSNSRTSLHRMTGF 336

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BLAST of mRNA_S-ischiensis_contig8.19507.1 vs. uniprot
Match: A0A7S4QPC4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QPC4_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.060e-13
Identity = 51/138 (36.96%), Postives = 77/138 (55.80%), Query Frame = 0

Query:  243 RGARLVASVLPTLTLEKLGLGFNRIATLGVTAIMQAVLQTTSLTSVVLSGNSLETDAAKAIALALAQHRCTLQHLYLDHTSLGRAGEGHIAAGLLTNRALHLKTLTGFRLGAALGVMGLPGQMEVLTNDQALDHVRAL 380
            RGA+L A VL ++ LE L LGFNRI T G+ A+M+++ +  +L S+ LSGN                         +D+ S+G A + HI AG+++N  L L+ +TGF +GA    +GLP  +E  TN+Q L  +R +
Sbjct:   16 RGAQLAAVVLTSVKLEVLDLGFNRITTGGIKALMKSLAENDTLLSLTLSGNPXX-XXXXXXXXXXXXXXXXXXXXXVDNCSVGYAAQRHITAGIVSNSQLSLRVITGFHIGAIAVTLGLPSALENWTNEQVLKFIRLM 152

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BLAST of mRNA_S-ischiensis_contig8.19507.1 vs. uniprot
Match: A0A7S4RZB5_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RZB5_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 7.140e-10
Identity = 35/85 (41.18%), Postives = 57/85 (67.06%), Query Frame = 0

Query:  296 ETDAAKAIALALAQHRCTLQHLYLDHTSLGRAGEGHIAAGLLTNRALHLKTLTGFRLGAALGVMGLPGQMEVLTNDQALDHVRAL 380
            +++A+KA+A ALA +R +L+ ++LDH  +   G+ HI AG+++N  + L+ LTGF LGAA   +GLP  +E  TN+Q L  +  +
Sbjct:  501 DSEASKAVAYALAYNR-SLKSMFLDHCFIAHEGQRHITAGIVSNSGISLRNLTGFPLGAAAATLGLPPALENWTNEQLLKFIHLM 584

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BLAST of mRNA_S-ischiensis_contig8.19507.1 vs. uniprot
Match: A0A836CNV3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNV3_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 7.750e-6
Identity = 31/52 (59.62%), Postives = 37/52 (71.15%), Query Frame = 0

Query:    6 VDLSQKGLTAREARMLGPTLVKATWVTVLKLCYNALGDEGADAVARSIEGHV 57
            VDLSQKG+TAREA  L   L  AT + VLKLCYN LGD G  A+A +++ HV
Sbjct:   31 VDLSQKGITAREAVTLCRALRAATSLQVLKLCYNELGDGGTQALAAAVDRHV 82

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BLAST of mRNA_S-ischiensis_contig8.19507.1 vs. uniprot
Match: A0A7S4IL18_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IL18_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.150e-5
Identity = 27/64 (42.19%), Postives = 40/64 (62.50%), Query Frame = 0

Query:  317 LYLDHTSLGRAGEGHIAAGLLTNRALHLKTLTGFRLGAALGVMGLPGQMEVLTNDQALDHVRAL 380
            L+LDH S+G  G+ H+ AG+++N    L TLTGFR+G     +GLP  +E  TN+Q L  +  +
Sbjct:  497 LFLDHCSVGHEGQRHVTAGIVSNSGTCLHTLTGFRIGINAVSLGLPPALEQWTNEQVLKFIHLM 560

The following BLAST results are available for this feature:

BLAST of mRNA_S-ischiensis_contig8.19507.1 vs. uniprot

BLAST of mRNA_S-ischiensis_contig8.19507.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 10


Match Name	E-value	Identity	Description
D7FK51_ECTSI	3.900e-31	57.25	Hypothetical leucine rich repeat protein n=1 Tax=E...	[more]
A0A7S1YLQ8_9STRA	3.010e-22	42.66	Hypothetical protein (Fragment) n=1 Tax=Grammatoph...	[more]
A0A6H5KVK7_9PHAE	2.170e-19	47.69	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A1Z5K171_FISSO	9.380e-16	39.01	Uncharacterized protein n=2 Tax=Fistulifera solari...	[more]
A0A7S1VXR1_9STRA	3.980e-14	36.96	Hypothetical protein (Fragment) n=1 Tax=Ditylum br...	[more]
A0A1E7FR04_9STRA	5.190e-14	40.37	RNI-like protein (Fragment) n=1 Tax=Fragilariopsis...	[more]
A0A7S4QPC4_9STRA	1.060e-13	36.96	Hypothetical protein n=1 Tax=Ditylum brightwellii ...	[more]
A0A7S4RZB5_9STRA	7.140e-10	41.18	Hypothetical protein n=3 Tax=Ditylum brightwellii ...	[more]
A0A836CNV3_9STRA	7.750e-6	59.62	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S4IL18_9STRA	1.150e-5	42.19	Hypothetical protein n=1 Tax=Odontella aurita TaxI...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM00368	LRR_RI_2	coord: 28..55 e-value: 13.0 score: 9.4 coord: 227..254 e-value: 0.77 score: 17.9 coord: 311..338 e-value: 15.0 score: 8.9 coord: 171..198 e-value: 5.1E-4 score: 29.4 coord: 84..111 e-value: 9.6E-4 score: 28.4 coord: 56..83 e-value: 6.0E-4 score: 29.1 coord: 199..226 e-value: 3.3 score: 13.5 coord: 115..142 e-value: 0.039 score: 23.1 coord: 282..309 e-value: 3.5 score: 13.3 coord: 143..170 e-value: 2.1 score: 14.8
None	No IPR available	PANTHER	PTHR24111	FAMILY NOT NAMED	coord: 6..163 coord: 210..353 coord: 118..219 coord: 159..264
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 5..349
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10		coord: 2..112 e-value: 3.6E-25 score: 90.1
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10		coord: 267..414 e-value: 3.9E-15 score: 57.8
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10		coord: 113..266 e-value: 1.3E-35 score: 124.3
IPR001611	Leucine-rich repeat	PFAM	PF13516	LRR_6	coord: 86..106 e-value: 0.57 score: 10.4 coord: 29..50 e-value: 0.66 score: 10.2 coord: 198..221 e-value: 0.078 score: 13.1 coord: 283..304 e-value: 1.3 score: 9.2 coord: 118..137 e-value: 0.013 score: 15.5 coord: 58..78 e-value: 3.2E-4 score: 20.5 coord: 171..193 e-value: 5.1E-5 score: 23.0 coord: 256..276 e-value: 1.8 score: 8.8

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-ischiensis_contig8	contig	S-ischiensis_contig8:1850032..1858164 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Schizocladia ischiensis KU_0333	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-ischiensis_contig8.19507.1	mRNA_S-ischiensis_contig8.19507.1	Schizocladia ischiensis KU_0333	mRNA	S-ischiensis_contig8 1850032..1858165 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-ischiensis_contig8.19507.1 ID=prot_S-ischiensis_contig8.19507.1|Name=mRNA_S-ischiensis_contig8.19507.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=517bp
APATTVDLSQKGLTAREARMLGPTLVKATWVTVLKLCYNALGDEGADAVA
RSIEGHVSLQALDLGFNGIGDAGAASLARSLRMNGCLRTLYLSGNSILAK
GAQALAGALRATRGTNGLATLHLTGNSIGPDGAVALAEALQSNVSLQRLY
LGGGGIQVRGACALGAALAGNTWLRYLYLSDNQMGDQGLYALSQALQQNR
SLKLLELGFNRVTAAGVEGLANSLWGYNTLKVLQLDNNQIMDRGARLVAS
VLPTLTLEKLGLGFNRIATLGVTAIMQAVLQTTSLTSVVLSGNSLETDAA
KAIALALAQHRCTLQHLYLDHTSLGRAGEGHIAAGLLTNRALHLKTLTGF
RLGAALGVMGLPGQMEVLTNDQALDHVRALRQLQLAAEAAHHHQLQQQQQ
QQQRDQQQGQQPQQGGRHSPPPEHAGAAVGATAAAAEAAAAAAAAQWQQL
LPQQQLLLLLQQQHLQQQRQQQQRQHQHHHQQQQQQLQQQPPPPPPPQHQ
QQQRLRPQRQQTWAGGS

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	LRR_dom_sf
IPR001611	Leu-rich_rpt