prot_S-ischiensis_contig8.19406.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig8.19406.1
Unique Nameprot_S-ischiensis_contig8.19406.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length122
Homology
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BLAST of mRNA_S-ischiensis_contig8.19406.1 vs. uniprot
Match: D7G7B3_ECTSI (1-aminocyclopropane-1-carboxylate synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7B3_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 1.640e-7
Identity = 39/86 (45.35%), Postives = 52/86 (60.47%), Query Frame = 0 
Query:   14 TLMLGVGVAAFVLALGTCRQVRERRQ-----RTRVSRRARKEVRAQGETPVHIAEHIKREHDPTYVCLAIAENRITVHPLLHKVAQ 94
            +L LG G+ + V  L     V ERR+     R R S+R+ +  R  G TP HI EHI R  DP Y+CL+IAEN++TV PLL K+ +
Sbjct:   14 SLALGAGLTSLVAVLAYRIGVIERRRHLSGARWRSSKRSAELTR--GGTPAHILEHIARLGDPDYICLSIAENKLTVGPLLDKLRE 97
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19406.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7B3_ECTSI1.640e-745.351-aminocyclopropane-1-carboxylate synthase n=2 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 12..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..122
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 23..27
NoneNo IPR availableTMHMMTMhelixcoord: 10..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1231514..1232331 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19406.1mRNA_S-ischiensis_contig8.19406.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig8 1231112..1232331 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig8.19406.1 ID=prot_S-ischiensis_contig8.19406.1|Name=mRNA_S-ischiensis_contig8.19406.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=122bp
MALAAARSRGRAATLMLGVGVAAFVLALGTCRQVRERRQRTRVSRRARKE
VRAQGETPVHIAEHIKREHDPTYVCLAIAENRITVHPLLHKVAQLRRRRW
RRQMPASRRVPTGPGPGSEPGA
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