mRNA_S-ischiensis_contig8.19406.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19406.1
Unique NamemRNA_S-ischiensis_contig8.19406.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1231112..1232331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size769
Cds size366
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19406.1prot_S-ischiensis_contig8.19406.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1231514..1232331 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817279.171405-UTR-S-ischiensis_contig8:1231111..12315131622817279.171405-UTR-S-ischiensis_contig8:1231111..1231513Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1231112..1231513 +
1695740990.7888274-UTR-S-ischiensis_contig8:1231111..12315131695740990.7888274-UTR-S-ischiensis_contig8:1231111..1231513Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1231112..1231513 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817279.1823528-CDS-S-ischiensis_contig8:1231513..12317651622817279.1823528-CDS-S-ischiensis_contig8:1231513..1231765Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1231514..1231765 +
1695740990.80201-CDS-S-ischiensis_contig8:1231513..12317651695740990.80201-CDS-S-ischiensis_contig8:1231513..1231765Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1231514..1231765 +
1622817279.192854-CDS-S-ischiensis_contig8:1232217..12323311622817279.192854-CDS-S-ischiensis_contig8:1232217..1232331Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1232218..1232331 +
1695740990.8128335-CDS-S-ischiensis_contig8:1232217..12323311695740990.8128335-CDS-S-ischiensis_contig8:1232217..1232331Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1232218..1232331 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19406.1

>prot_S-ischiensis_contig8.19406.1 ID=prot_S-ischiensis_contig8.19406.1|Name=mRNA_S-ischiensis_contig8.19406.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=122bp
MALAAARSRGRAATLMLGVGVAAFVLALGTCRQVRERRQRTRVSRRARKE
VRAQGETPVHIAEHIKREHDPTYVCLAIAENRITVHPLLHKVAQLRRRRW
RRQMPASRRVPTGPGPGSEPGA
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mRNA from alignment at S-ischiensis_contig8:1231112..1232331+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19406.1 ID=mRNA_S-ischiensis_contig8.19406.1|Name=mRNA_S-ischiensis_contig8.19406.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1220bp|location=Sequence derived from alignment at S-ischiensis_contig8:1231112..1232331+ (Schizocladia ischiensis KU_0333)
GCGGCGAAAGGCGGCTTGGCGAGAGGCCATGGTGGTGCCTGCAGTACGAC
CGTACGCAATTCTCTCGCTAAGAAGTAGGGGACCGACGTCCTGGCGGGCT
TGGAGGTGGATATCTAACCTGTAGTGCACACACGCGCGCGCGCGCGCGCT
CGCACGCACACACACACACACCAATCAGAGAGCCAGCTGTGCAGCACCCC
TTATAGCCCCCGTAGACATACCTCACAGCACAGCCACACAGCTCGGCTTT
GTACGCACAGCCCAGACATATGAAGCTCTCAGGGGCGCTGAAAATTCAGG
GCGTCTGACAAAGTGTTATTTTCTTGGACAGGTCCCAGGGCCACTGAAAT
ACCAGCGCCGCAGACAAAGGTTTCTCTCTTTTTGTCACTGCAGCTGCGCC
CAATGGCCCTCGCAGCGGCCAGATCTAGGGGCAGGGCCGCCACCCTGATG
CTTGGGGTGGGCGTGGCTGCTTTCGTGCTGGCACTAGGCACGTGCAGGCA
GGTTCGTGAGAGACGGCAGCGCACGAGGGTCTCGCGGCGCGCCCGCAAGG
AGGTCCGGGCCCAGGGAGAGACACCCGTCCACATCGCCGAGCACATCAAG
CGCGAGCATGATCCCACCTACGTGTGCCTGGCCATCGCGGAGAACAGAAT
TACGGTGCGTACCTGGGTTGTCGGCAAGCCGGGCATCCGTGGCGTCACTG
GCAAGTACGCTAGCGGGAGTGTTTGCGGCTTTGCAAGTGCCCCGTCGGTA
GGCAACAGCCACCTACTGTACCCACACTTCGTCGTGTGGTGTGGTGGTGG
CATTCGGTTCATATGTGCGTGTCATCGTGTCCCAGAGCTGAGGTTGCTAT
GTAGTAGTGGCCAAGGAAACAGAAAACTGTCCCCAACCCTGAAGACCGCG
ACATACTGTGAGCTACAGCTGTACTGTAGTTTGCCACACACGCCCCCCAA
GGCGCCTCCCTCGCCGCATACAGGTTAGTCCTGCATGGTTCACCCACGGC
CTATCCTAGCACACCCCGTGCCACCGTGTGCCACAAACGCCCCCCCAAAC
TTCTCATGTGCGCCCCAAACCCCTCGCTGTCCCTGTGCCCTCCCCCACCT
GTACAGGTGCACCCGCTTCTCCATAAAGTGGCCCAGCTCCGCCGACGTAG
ATGGCGGCGGCAAATGCCTGCCAGCAGACGAGTGCCGACCGGGCCGGGCC
CGGGGTCGGAGCCAGGGGCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1231112..1232331+

>mRNA_S-ischiensis_contig8.19406.1 ID=mRNA_S-ischiensis_contig8.19406.1|Name=mRNA_S-ischiensis_contig8.19406.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=732bp|location=Sequence derived from alignment at S-ischiensis_contig8:1231112..1232331+ (Schizocladia ischiensis KU_0333)
ATGGCCCTCGCAGCGGCCAGATCTAGGGGCAGGGCCGCCACCCTGATGCT
TGGGGTGGGCGTGGCTGCTTTCGTGCTGGCACTAGGCACGTGCAGGCAGG
TTCGTGAGAGACGGCAGCGCACGAGGGTCTCGCGGCGCGCCCGCAAGGAG
GTCCGGGCCCAGGGAGAGACACCCGTCCACATCGCCGAGCACATCAAGCG
CGAGCATGATCCCACCTACGTGTGCCTGGCCATCGCGGAGAACAGAATTA
CGATGGCCCTCGCAGCGGCCAGATCTAGGGGCAGGGCCGCCACCCTGATG
CTTGGGGTGGGCGTGGCTGCTTTCGTGCTGGCACTAGGCACGTGCAGGCA
GGTTCGTGAGAGACGGCAGCGCACGAGGGTCTCGCGGCGCGCCCGCAAGG
AGGTCCGGGCCCAGGGAGAGACACCCGTCCACATCGCCGAGCACATCAAG
CGCGAGCATGATCCCACCTACGTGTGCCTGGCCATCGCGGAGAACAGAAT
TACGGTGCACCCGCTTCTCCATAAAGTGGCCCAGCTCCGCCGACGTAGAT
GGCGGCGGCAAATGCCTGCCAGCAGACGAGTGCCGACCGGGCCGGGCCCG
GGGTCGGAGCCAGGGGCGGTGCACCCGCTTCTCCATAAAGTGGCCCAGCT
CCGCCGACGTAGATGGCGGCGGCAAATGCCTGCCAGCAGACGAGTGCCGA
CCGGGCCGGGCCCGGGGTCGGAGCCAGGGGCG
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