prot_S-ischiensis_contig8.19405.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig8.19405.1
Unique Nameprot_S-ischiensis_contig8.19405.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length295
Homology
BLAST of mRNA_S-ischiensis_contig8.19405.1 vs. uniprot
Match: W7TSC2_9STRA (Trna rrna methyltransferase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSC2_9STRA)

HSP 1 Score: 117 bits (294), Expect = 3.450e-28
Identity = 74/158 (46.84%), Postives = 98/158 (62.03%), Query Frame = 0
Query:  129 QNVGSVARAMLNFGMHELRLVEPACDWRDEGARMTAAGAGQVLDEALVFPAISDAVSDLKQVIATSAFRGRDLTLRLTDPAGAAQLVLPDVAGPAPSGQASGSGGTGAPGLAPGAGYLFGPERTGLTNGELSRHATCVCVIPSNPAFASLNLAQAVSI 286
            +NVGS ARAMLNFG+ +LR+++P CD     AR  A+GA  VL+ A VF  + +AV+DL +VI TSA R RD+T+ +  P  AA+L +  +A  A  G                AGY+FG ER GLTN +L  +A  +  IP+NPAF+SLNL QAV I
Sbjct:   87 ENVGSCARAMLNFGLTDLRIIDPFCDHLTPMARARASGADNVLEGARVFRGLDEAVADLSEVIGTSA-RQRDMTITIVSPEEAARLAVGTLANFARGGAR--------------AGYMFGSERNGLTNEDLV-YADRILQIPTNPAFSSLNLGQAVQI 228          
BLAST of mRNA_S-ischiensis_contig8.19405.1 vs. uniprot
Match: A0A4D9D8T0_9STRA (SpoU_methylase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8T0_9STRA)

HSP 1 Score: 117 bits (294), Expect = 4.590e-27
Identity = 74/158 (46.84%), Postives = 98/158 (62.03%), Query Frame = 0
Query:  129 QNVGSVARAMLNFGMHELRLVEPACDWRDEGARMTAAGAGQVLDEALVFPAISDAVSDLKQVIATSAFRGRDLTLRLTDPAGAAQLVLPDVAGPAPSGQASGSGGTGAPGLAPGAGYLFGPERTGLTNGELSRHATCVCVIPSNPAFASLNLAQAVSI 286
            +NVGS ARAMLNFG+ +LR+++P CD     AR  A+GA  VL+ A VF  + +AV+DL +VI TSA R RD+T+ +  P  AA+L +  +A  A  G                AGY+FG ER GLTN +L  +A  +  IP+NPAF+SLNL QAV I
Sbjct:   40 ENVGSCARAMLNFGLTDLRIIDPFCDHLTPMARARASGADNVLEGARVFRGLDEAVADLSEVIGTSA-RQRDMTVTIVSPEEAARLAVGTLANFAQGGAR--------------AGYMFGSERNGLTNEDLV-YADRILQIPTNPAFSSLNLGQAVQI 181          
BLAST of mRNA_S-ischiensis_contig8.19405.1 vs. uniprot
Match: A0A835ZGP2_9STRA (RNA methyltransferase, TrmH family, group 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGP2_9STRA)

HSP 1 Score: 113 bits (283), Expect = 4.680e-26
Identity = 78/165 (47.27%), Postives = 103/165 (62.42%), Query Frame = 0
Query:  122 QPTLPPSQNVGSVARAMLNFGMHELRLVEPACDWRDEGARMTAAGAGQVLDEALVFPAISDAVSDLKQVIATSAFRGRDLTLRLTDPAGAAQLVLPDVAGPAPSGQASGSGGTGAPGLAPGAGYLFGPERTGLTNGELSRHATCVCVIPSNPAFASLNLAQAVSI 286
            +PTL  S+NVG+ ARAMLNFG+ ELRLVEP CD  DE A   AAGA +VL  A  F +++ AV+DL  V AT+A R RD+T  +T P  AA  +    A  APS +A               G L+GPE +GL+N +L+ HA  +  IP+  AF+SLNL+QAV++
Sbjct:   29 RPTL--SENVGACARAMLNFGLAELRLVEPRCDPLDEAAVRRAAGAEEVLRGAQRFASVAKAVADLSSVYATTA-RARDMTSVVTTPRSAAAAI----AAAAPSDRA---------------GVLYGPEASGLSNADLA-HAAALIQIPTFEAFSSLNLSQAVNL 170          
BLAST of mRNA_S-ischiensis_contig8.19405.1 vs. uniprot
Match: UPI0012E2D60B (RNA methyltransferase n=1 Tax=Sandarakinorhabdus oryzae TaxID=2675220 RepID=UPI0012E2D60B)

HSP 1 Score: 110 bits (275), Expect = 2.730e-25
Identity = 69/160 (43.12%), Postives = 91/160 (56.88%), Query Frame = 0
Query:  130 NVGSVARAMLNFGMHELRLVEPACDWRDEGARMTAAGAGQVLDEALVFPAISDAVSDLKQVIATSAFRGRDLTLRLTDPAG--AAQLVLPDVAGPAPSGQASGSGGTGAPGLAPGAGYLFGPERTGLTNGELSRHATCVCVIPSNPAFASLNLAQAVSIV 287
            N+G+VARAMLNFG+ ELRLV+P   W +  A  +AAGA  V++ A +F +++DA++D    I T A   RD+T R+T PAG  A    LP  +                         LFGPERTGL   +L  H   +C IPSNP F SLNLAQAV+++
Sbjct:   18 NIGAVARAMLNFGLTELRLVQPRDGWPNPEAGPSAAGADSVIEGATLFDSVADAIADCTLAIGT-AMTTRDMTRRVTSPAGCVAEMQALPGKSA-----------------------LLFGPERTGLVRDDLL-HCHAICTIPSNPDFGSLNLAQAVAVM 152          
BLAST of mRNA_S-ischiensis_contig8.19405.1 vs. uniprot
Match: A0A7S3XR83_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XR83_HETAK)

HSP 1 Score: 111 bits (278), Expect = 8.210e-25
Identity = 78/160 (48.75%), Postives = 95/160 (59.38%), Query Frame = 0
Query:  129 QNVGSVARAMLNFGMHELRLVEPACDWRDEGARMTAAGAGQVLDEALVFPAISDAVSDLKQVIATSAFRGRDLTLRLTDPAGAAQLVLPDVAGPAPSGQASGSGGTGAPGLAPGAGYLFGPERTGLTNGELSRHATCVCVIPSNPAFASLNLAQAVSIVA 288
            QNVG+VARAMLNFG+H+LRLV P CD   E A   A+GA  VL  A VFP I +AV DL +V AT+A R RDL   +  P  AA        G A   +A G             G+LFG E +GL+N EL    T V  IP+NP F+SLNLAQAV+++A
Sbjct:  104 QNVGAVARAMLNFGLHDLRLVGPRCDHLGEEAMARASGAAGVLQAARVFPTIEEAVKDLHRVFATTA-RQRDLAQVIVTPRAAA--------GAAERCRARGQR----------CGFLFGTEASGLSNEELGLADTLVH-IPTNPFFSSLNLAQAVNLIA 243          
BLAST of mRNA_S-ischiensis_contig8.19405.1 vs. uniprot
Match: A0A7V5QCM1_9HYPH (RNA methyltransferase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7V5QCM1_9HYPH)

HSP 1 Score: 109 bits (273), Expect = 8.810e-25
Identity = 71/160 (44.38%), Postives = 95/160 (59.38%), Query Frame = 0
Query:  129 QNVGSVARAMLNFGMHELRLVEPACDWRDEGARMTAAGAGQVLDEALVFPAISDAVSDLKQVIATSAFRGRDLTLRLTDPAGAAQLVLPDVAGPAPSGQASGSGGTGAPGLAPGAGYLFGPERTGLTNGELSRHATCVCVIPSNPAFASLNLAQAVSIVA 288
            QN+G+ ARAM NFG+ E+RLV P   W  E A+  A+GA  V+D AL+F    DAV+DL  V+AT+A R RD+ + +  P  AA+ +   +AG    G+                G LFGPER+G+ N E+   A  + + P NPAFASLNLAQAV +VA
Sbjct:   26 QNIGTAARAMANFGLDEMRLVAPRDGWPSEYAKKAASGADHVIDNALLFERAEDAVADLNFVMATTA-RPRDMAIEIFTPEDAAREMHRRIAG----GER--------------VGVLFGPERSGMENDEIVL-ADAIIMAPVNPAFASLNLAQAVLMVA 165          
BLAST of mRNA_S-ischiensis_contig8.19405.1 vs. uniprot
Match: A7HWA7_PARL1 (tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) TaxID=402881 RepID=A7HWA7_PARL1)

HSP 1 Score: 108 bits (271), Expect = 1.610e-24
Identity = 70/160 (43.75%), Postives = 97/160 (60.62%), Query Frame = 0
Query:  129 QNVGSVARAMLNFGMHELRLVEPACDWRDEGARMTAAGAGQVLDEALVFPAISDAVSDLKQVIATSAFRGRDLTLRLTDPAGAAQLVLPDVAGPAPSGQASGSGGTGAPGLAPGAGYLFGPERTGLTNGELSRHATCVCVIPSNPAFASLNLAQAVSIVA 288
            +N+G+ ARAMLNFG+ +LRLV P   W +E AR  A+GA +V+D A +F   ++A++DL  VIAT+A R RD+   +  P  AA  +            A G+GG         AG LFGPERTGL N ++   A  + ++P NPAFASLNLAQ V +++
Sbjct:   29 ENIGTAARAMLNFGLTDLRLVRPRDGWPNERARAAASGADEVIDGARLFATTAEAIADLDYVIATTA-RSRDMVKPILTPETAATQMR----------VAFGAGGR--------AGLLFGPERTGLENDDIVL-ADALMMVPVNPAFASLNLAQCVLLMS 168          
BLAST of mRNA_S-ischiensis_contig8.19405.1 vs. uniprot
Match: A0A255Y654_9SPHN (rRNA methyltransferase n=2 Tax=Sandarakinorhabdus cyanobacteriorum TaxID=1981098 RepID=A0A255Y654_9SPHN)

HSP 1 Score: 108 bits (270), Expect = 1.930e-24
Identity = 70/158 (44.30%), Postives = 91/158 (57.59%), Query Frame = 0
Query:  130 NVGSVARAMLNFGMHELRLVEPACDWRDEGARMTAAGAGQVLDEALVFPAISDAVSDLKQVIATSAFRGRDLTLRLTDPAGAAQLVLPDVAGPAPSGQASGSGGTGAPGLAPGAGYLFGPERTGLTNGELSRHATCVCVIPSNPAFASLNLAQAVSIV 287
            N+G+VARAMLNFG+ ELRLV P   W +  A  +AAGA  V++ A+VF  ++DA++D    I T A   RD+  R+T PAGA   +    A P  S                    +FGPERTGLT  +L  H   +C IPSNP F SLNLAQAV+++
Sbjct:   31 NIGAVARAMLNFGLTELRLVAPRDGWPNPEAGPSAAGADAVIEGAVVFDTLADAIADCALTIGT-AMTTRDMIRRVTSPAGAVAEMR---AAPVTSA------------------LVFGPERTGLTREDLL-HCHALCTIPSNPDFGSLNLAQAVAVM 165          
BLAST of mRNA_S-ischiensis_contig8.19405.1 vs. uniprot
Match: A0A833GCJ8_9HYPH (tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (Fragment) n=1 Tax=Pseudorhodoplanes sp. TaxID=1934341 RepID=A0A833GCJ8_9HYPH)

HSP 1 Score: 109 bits (272), Expect = 2.120e-24
Identity = 71/160 (44.38%), Postives = 96/160 (60.00%), Query Frame = 0
Query:  129 QNVGSVARAMLNFGMHELRLVEPACDWRDEGARMTAAGAGQVLDEALVFPAISDAVSDLKQVIATSAFRGRDLTLRLTDPAGAAQLVLPDVAGPAPSGQASGSGGTGAPGLAPGAGYLFGPERTGLTNGELSRHATCVCVIPSNPAFASLNLAQAVSIVA 288
            +N+G+ ARAM NFG+  LRLV P   W +E ARM AAGA +VL+ A ++P ++ A++D + V+A +A R  D    +  P  AA+LV P V+          +G T A        Y+FG ER GL N E+   A  V  +P NPAFASLNLAQAV+I+A
Sbjct:   29 ENIGAAARAMANFGLARLRLVAPQQGWPNEKARMMAAGADRVLEAAALYPTLAAAIADCRYVVAATA-RAHDQAKPVIGPQQAAELVAPRVS----------AGDTVA--------YVFGRERNGLENDEVGL-ADAVVTLPVNPAFASLNLAQAVAILA 168          
BLAST of mRNA_S-ischiensis_contig8.19405.1 vs. uniprot
Match: A0A3D4F3S3_9HYPH (tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A3D4F3S3_9HYPH)

HSP 1 Score: 108 bits (270), Expect = 3.440e-24
Identity = 67/159 (42.14%), Postives = 96/159 (60.38%), Query Frame = 0
Query:  129 QNVGSVARAMLNFGMHELRLVEPACDWRDEGARMTAAGAGQVLDEALVFPAISDAVSDLKQVIATSAFRGRDLTLRLTDPAGAAQLVLPDVAGPAPSGQASGSGGTGAPGLAPGAGYLFGPERTGLTNGELSRHATCVCVIPSNPAFASLNLAQAVSIV 287
            +N+G+VARAMLNFG+ +LRLV P  DW+ E AR  AAGA  ++D  L+F ++++A +DL  V+AT+A R RD+   +  PA  A  +       A +                 +G +FGPERTGL N ++S  A  +C +P NP F+SLNLAQAV ++
Sbjct:   22 ENIGTVARAMLNFGLTDLRLVRPRSDWQVERARKAAAGAEALIDNRLMFDSVAEATADLGFVVATTA-RLRDMVKPVMTPAHLAVEMRRQAHETATT-----------------SGVMFGPERTGLDNEDISL-ADAICRVPLNPEFSSLNLAQAVLLI 161          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19405.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TSC2_9STRA3.450e-2846.84Trna rrna methyltransferase n=1 Tax=Nannochloropsi... [more]
A0A4D9D8T0_9STRA4.590e-2746.84SpoU_methylase domain-containing protein n=1 Tax=N... [more]
A0A835ZGP2_9STRA4.680e-2647.27RNA methyltransferase, TrmH family, group 1 n=1 Ta... [more]
UPI0012E2D60B2.730e-2543.13RNA methyltransferase n=1 Tax=Sandarakinorhabdus o... [more]
A0A7S3XR83_HETAK8.210e-2548.75Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7V5QCM1_9HYPH8.810e-2544.38RNA methyltransferase n=1 Tax=Hyphomicrobiales bac... [more]
A7HWA7_PARL11.610e-2443.75tRNA (cytidine/uridine-2'-O-)-methyltransferase Tr... [more]
A0A255Y654_9SPHN1.930e-2444.30rRNA methyltransferase n=2 Tax=Sandarakinorhabdus ... [more]
A0A833GCJ8_9HYPH2.120e-2444.38tRNA (cytidine/uridine-2'-O-)-methyltransferase Tr... [more]
A0A3D4F3S3_9HYPH3.440e-2442.14tRNA (cytidine/uridine-2'-O-)-methyltransferase Tr... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001537tRNA/rRNA methyltransferase, SpoU typePFAMPF00588SpoU_methylasecoord: 128..288
e-value: 3.5E-22
score: 79.1
IPR004384RNA methyltransferase TrmJ/LasTPIRSFPIRSF004808LasTcoord: 240..292
e-value: 3.5E-12
score: 44.3
coord: 125..218
e-value: 4.7E-22
score: 76.6
IPR004384RNA methyltransferase TrmJ/LasTPANTHERPTHR42786FAMILY NOT NAMEDcoord: 129..290
IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalGENE3D3.40.1280.10coord: 123..293
e-value: 3.5E-34
score: 120.2
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..294
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..21
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..26
score: 0.783
IPR029028Alpha/beta knot methyltransferasesSUPERFAMILY75217alpha/beta knotcoord: 129..288

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1226811..1230847 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19405.1mRNA_S-ischiensis_contig8.19405.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig8 1226772..1231071 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig8.19405.1 ID=prot_S-ischiensis_contig8.19405.1|Name=mRNA_S-ischiensis_contig8.19405.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=295bp
MGHPGGTQWLHAVCLSLIGLATVATGLRTGVCMGSVRAGREKVPKSEAYS
QTAAAHATAPVVVLVRPAVDQVRGGACGHSPSDALGKLEPYVTASIEHPP
VVCLLTHQPRPLRPPSITPDRQPTLPPSQNVGSVARAMLNFGMHELRLVE
PACDWRDEGARMTAAGAGQVLDEALVFPAISDAVSDLKQVIATSAFRGRD
LTLRLTDPAGAAQLVLPDVAGPAPSGQASGSGGTGAPGLAPGAGYLFGPE
RTGLTNGELSRHATCVCVIPSNPAFASLNLAQAVSIVACQVGDF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001537SpoU_MeTrfase
IPR004384RNA_MeTrfase_TrmJ/LasT
IPR029026tRNA_m1G_MTases_N
IPR029028Alpha/beta_knot_MTases