prot_S-ischiensis_contig8.19385.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig8.19385.1
Unique Nameprot_S-ischiensis_contig8.19385.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length69
Homology
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BLAST of mRNA_S-ischiensis_contig8.19385.1 vs. uniprot
Match: A0A6H5KQH5_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH5_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 4.310e-5
Identity = 25/54 (46.30%), Postives = 35/54 (64.81%), Query Frame = 0 
Query:    1 VEGLDFSGSEPWTLDQLVAYMCDLTGVLVLRLRRGHGPPERDPDDGLDDLMQQG 54
            VE LDF  +E W +DQLV+YM +L GV++L + RG GP  + P   L++ M  G
Sbjct:  420 VEELDFE-TERWDMDQLVSYMGELMGVVILHVMRGFGPLPQAPKSDLENGMSYG 472
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19385.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KQH5_9PHAE4.310e-546.30PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1087615..1088221 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19385.1mRNA_S-ischiensis_contig8.19385.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig8 1087613..1088221 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig8.19385.1 ID=prot_S-ischiensis_contig8.19385.1|Name=mRNA_S-ischiensis_contig8.19385.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=69bp
VEGLDFSGSEPWTLDQLVAYMCDLTGVLVLRLRRGHGPPERDPDDGLDDL
MQQGPGATTTHRPPGPAGA
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