mRNA_S-ischiensis_contig8.19385.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19385.1
Unique NamemRNA_S-ischiensis_contig8.19385.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19385.1 vs. uniprot
Match: A0A6H5KQH5_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH5_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 4.310e-5
Identity = 25/54 (46.30%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    1 VEGLDFSGSEPWTLDQLVAYMCDLTGVLVLRLRRGHGPPERDPDDGLDDLMQQG 162
            VE LDF  +E W +DQLV+YM +L GV++L + RG GP  + P   L++ M  G
Sbjct:  420 VEELDFE-TERWDMDQLVSYMGELMGVVILHVMRGFGPLPQAPKSDLENGMSYG 472
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KQH5_9PHAE4.310e-546.30PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1087613..1088221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size210
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817277.6685772-CDS-S-ischiensis_contig8:1087614..10877731622817277.6685772-CDS-S-ischiensis_contig8:1087614..1087773Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1087615..1087773 -
1695740989.4654698-CDS-S-ischiensis_contig8:1087614..10877731695740989.4654698-CDS-S-ischiensis_contig8:1087614..1087773Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1087615..1087773 -
1622817277.679997-CDS-S-ischiensis_contig8:1088173..10882211622817277.679997-CDS-S-ischiensis_contig8:1088173..1088221Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1088174..1088221 -
1695740989.4793725-CDS-S-ischiensis_contig8:1088173..10882211695740989.4793725-CDS-S-ischiensis_contig8:1088173..1088221Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1088174..1088221 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19385.1prot_S-ischiensis_contig8.19385.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1087615..1088221 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19385.1

>prot_S-ischiensis_contig8.19385.1 ID=prot_S-ischiensis_contig8.19385.1|Name=mRNA_S-ischiensis_contig8.19385.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=69bp
VEGLDFSGSEPWTLDQLVAYMCDLTGVLVLRLRRGHGPPERDPDDGLDDL
MQQGPGATTTHRPPGPAGA
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mRNA from alignment at S-ischiensis_contig8:1087613..1088221-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19385.1 ID=mRNA_S-ischiensis_contig8.19385.1|Name=mRNA_S-ischiensis_contig8.19385.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=609bp|location=Sequence derived from alignment at S-ischiensis_contig8:1087613..1088221- (Schizocladia ischiensis KU_0333)
GTGGAGGGGCTGGATTTTAGTGGGAGCGAGCCTTGGACGCTGGATCAGGT
GGGAGGCATGTGCACGAGGTGTTGAACGGGGCGGGCGGGGGGTTCGTTGA
GATCCTTCGTGTTGCGAGTTGGCCGGGGTGCAGTTGTCCTTCAATAGAAG
CGGCTTCAGTAGCTCTACTATGTACTGTAGTGCGAGGTACACTGCTACTG
CGTAGTCACTTCGAAGTACAGTGTTACAGTGCCAGTAACATATACTACGT
AGTATACCTCTTTCTCCAGCACATCTATATTGTGACTTGTACCCTTCCCC
CTCCTCCTCCTTCTCCCCTCCCCCGTCAACCCCTTCCTCCGGAGGACCTC
ATCGTTTCTCCCCCACCTCTGCACTGTGACTTGTACCCTTCCCCCACCTC
CTCCTCCTTCTCCCCCCCCTCCTCCTCCTCCTCTCCCCCGAACACCAGCT
GGTGGCGTACATGTGCGACCTGACCGGCGTGCTTGTCCTCCGCCTCCGGA
GGGGCCACGGCCCCCCCGAGCGCGACCCAGACGACGGCCTCGACGACCTC
ATGCAGCAGGGTCCGGGCGCTACCACCACTCACAGGCCGCCGGGGCCGGC
GGGGGCAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1087613..1088221-

>mRNA_S-ischiensis_contig8.19385.1 ID=mRNA_S-ischiensis_contig8.19385.1|Name=mRNA_S-ischiensis_contig8.19385.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=414bp|location=Sequence derived from alignment at S-ischiensis_contig8:1087613..1088221- (Schizocladia ischiensis KU_0333)
GTGGAGGGGCTGGATTTTAGTGGGAGCGAGCCTTGGACGCTGGATCAGGT
GGAGGGGCTGGATTTTAGTGGGAGCGAGCCTTGGACGCTGGATCAGCTGG
TGGCGTACATGTGCGACCTGACCGGCGTGCTTGTCCTCCGCCTCCGGAGG
GGCCACGGCCCCCCCGAGCGCGACCCAGACGACGGCCTCGACGACCTCAT
GCAGCAGGGTCCGGGCGCTACCACCACTCACAGGCCGCCGGGGCCGGCGG
GGGCACTGGTGGCGTACATGTGCGACCTGACCGGCGTGCTTGTCCTCCGC
CTCCGGAGGGGCCACGGCCCCCCCGAGCGCGACCCAGACGACGGCCTCGA
CGACCTCATGCAGCAGGGTCCGGGCGCTACCACCACTCACAGGCCGCCGG
GGCCGGCGGGGGCA
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