prot_S-ischiensis_contig7.18307.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig7.18307.1
Unique Nameprot_S-ischiensis_contig7.18307.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length113
Homology
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BLAST of mRNA_S-ischiensis_contig7.18307.1 vs. uniprot
Match: A0A6H5JZS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZS7_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 5.490e-18
Identity = 54/114 (47.37%), Postives = 63/114 (55.26%), Query Frame = 0 
Query:    1 MALIGRGDEGEELNLPHQSLGDTYIELISEVMAKGLLPNMTKLDLRDNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-SLCAFLKSPTCQLREVILAKADMDDNE 113
            MAL    D G EL+LPHQSLG+TYIELISEV+    LP +T+L+LRDNR                                      SLCAFLKSPTC LRE++LAKAD+DD E
Sbjct:    1 MALTETVDGGVELSLPHQSLGNTYIELISEVVKD--LPGVTRLNLRDNRLTDVGVQEIVEAICGMDGHRGIQVLDLSENKLDTESAQSLCAFLKSPTCCLREILLAKADIDDGE 112
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BLAST of mRNA_S-ischiensis_contig7.18307.1 vs. uniprot
Match: D7G2L7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2L7_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 1.140e-16
Identity = 53/114 (46.49%), Postives = 63/114 (55.26%), Query Frame = 0 
Query:    1 MALIGRGDEGEELNLPHQSLGDTYIELISEVMAKGLLPNMTKLDLRDNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-SLCAFLKSPTCQLREVILAKADMDDNE 113
            MAL    + G EL+LPHQSLG+TYIELISEV+    LP +T+L+LRDNR                                      SLCAFLKSPTC LRE++LAKAD+DD E
Sbjct:    1 MALTETVEGGVELSLPHQSLGNTYIELISEVVKD--LPGVTRLNLRDNRLTDVGVQEIVEAICGMDGHRGIQVLDLSENKLDTVSAQSLCAFLKSPTCCLREILLAKADIDDGE 112
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig7.18307.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZS7_9PHAE5.490e-1847.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2L7_ECTSI1.140e-1646.49Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 67..94
e-value: 0.33
score: 20.0
coord: 37..64
e-value: 2.1
score: 14.9
NoneNo IPR availablePANTHERPTHR24114FAMILY NOT NAMEDcoord: 11..111
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 12..108
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 38..56
e-value: 0.02
score: 14.9
coord: 67..89
e-value: 0.049
score: 13.7
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 8..113
e-value: 8.8E-18
score: 66.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig7contigS-ischiensis_contig7:3379464..3382093 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig7.18307.1mRNA_S-ischiensis_contig7.18307.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig7 3379464..3382093 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig7.18307.1 ID=prot_S-ischiensis_contig7.18307.1|Name=mRNA_S-ischiensis_contig7.18307.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=113bp
MALIGRGDEGEELNLPHQSLGDTYIELISEVMAKGLLPNMTKLDLRDNRL
TDVAVQMVVEAICSSTDHSVQVLDLSENKLDTVSAQSLCAFLKSPTCQLR
EVILAKADMDDNE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf