mRNA_S-ischiensis_contig7.18307.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig7.18307.1
Unique NamemRNA_S-ischiensis_contig7.18307.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig7.18307.1 vs. uniprot
Match: A0A6H5JZS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZS7_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 5.490e-18
Identity = 54/114 (47.37%), Postives = 63/114 (55.26%), Query Frame = 1 
Query:    1 MALIGRGDEGEELNLPHQSLGDTYIELISEVMAKGLLPNMTKLDLRDNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-SLCAFLKSPTCQLREVILAKADMDDNE 339
            MAL    D G EL+LPHQSLG+TYIELISEV+    LP +T+L+LRDNR                                      SLCAFLKSPTC LRE++LAKAD+DD E
Sbjct:    1 MALTETVDGGVELSLPHQSLGNTYIELISEVVKD--LPGVTRLNLRDNRLTDVGVQEIVEAICGMDGHRGIQVLDLSENKLDTESAQSLCAFLKSPTCCLREILLAKADIDDGE 112
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BLAST of mRNA_S-ischiensis_contig7.18307.1 vs. uniprot
Match: D7G2L7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2L7_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 1.140e-16
Identity = 53/114 (46.49%), Postives = 63/114 (55.26%), Query Frame = 1 
Query:    1 MALIGRGDEGEELNLPHQSLGDTYIELISEVMAKGLLPNMTKLDLRDNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-SLCAFLKSPTCQLREVILAKADMDDNE 339
            MAL    + G EL+LPHQSLG+TYIELISEV+    LP +T+L+LRDNR                                      SLCAFLKSPTC LRE++LAKAD+DD E
Sbjct:    1 MALTETVEGGVELSLPHQSLGNTYIELISEVVKD--LPGVTRLNLRDNRLTDVGVQEIVEAICGMDGHRGIQVLDLSENKLDTVSAQSLCAFLKSPTCCLREILLAKADIDDGE 112
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig7.18307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZS7_9PHAE5.490e-1847.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2L7_ECTSI1.140e-1646.49Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig7contigS-ischiensis_contig7:3379464..3382093 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue3e-14
Seed eggNOG ortholog2880.D7G2L7
KEGG koko:K20865
KEGG Pathwayko04621,map04621
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
Ec32 ortholog descriptionLeucine rich repeat protein
Ec32 orthologEc-11_002700.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons3
Model size341
Cds size339
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig7.18307.1prot_S-ischiensis_contig7.18307.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig7 3379464..3382093 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817170.9747536-CDS-S-ischiensis_contig7:3379463..33795891622817170.9747536-CDS-S-ischiensis_contig7:3379463..3379589Schizocladia ischiensis KU_0333CDSS-ischiensis_contig7 3379464..3379589 -
1695740907.5578012-CDS-S-ischiensis_contig7:3379463..33795891695740907.5578012-CDS-S-ischiensis_contig7:3379463..3379589Schizocladia ischiensis KU_0333CDSS-ischiensis_contig7 3379464..3379589 -
1622817170.987302-CDS-S-ischiensis_contig7:3381115..33811991622817170.987302-CDS-S-ischiensis_contig7:3381115..3381199Schizocladia ischiensis KU_0333CDSS-ischiensis_contig7 3381116..3381199 -
1695740907.57191-CDS-S-ischiensis_contig7:3381115..33811991695740907.57191-CDS-S-ischiensis_contig7:3381115..3381199Schizocladia ischiensis KU_0333CDSS-ischiensis_contig7 3381116..3381199 -
1622817170.9978635-CDS-S-ischiensis_contig7:3381964..33820931622817170.9978635-CDS-S-ischiensis_contig7:3381964..3382093Schizocladia ischiensis KU_0333CDSS-ischiensis_contig7 3381965..3382093 -
1695740907.58348-CDS-S-ischiensis_contig7:3381964..33820931695740907.58348-CDS-S-ischiensis_contig7:3381964..3382093Schizocladia ischiensis KU_0333CDSS-ischiensis_contig7 3381965..3382093 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig7.18307.1

>prot_S-ischiensis_contig7.18307.1 ID=prot_S-ischiensis_contig7.18307.1|Name=mRNA_S-ischiensis_contig7.18307.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=113bp
MALIGRGDEGEELNLPHQSLGDTYIELISEVMAKGLLPNMTKLDLRDNRL
TDVAVQMVVEAICSSTDHSVQVLDLSENKLDTVSAQSLCAFLKSPTCQLR
EVILAKADMDDNE
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mRNA from alignment at S-ischiensis_contig7:3379464..3382093-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig7.18307.1 ID=mRNA_S-ischiensis_contig7.18307.1|Name=mRNA_S-ischiensis_contig7.18307.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2630bp|location=Sequence derived from alignment at S-ischiensis_contig7:3379464..3382093- (Schizocladia ischiensis KU_0333)
ATGGCCCTGATTGGGCGGGGGGACGAGGGAGAGGAGCTGAACCTCCCCCA
CCAGTCTCTCGGGGACACGTACATCGAGCTCATTAGTGAGGTGATGGCCA
AGGGGCTGCTGCCCAACATGACCAAGCTGGTGAGTACGTTTTTTTAACCC
TTTTCCCCCTGGGGTCCGAATAATAGTAGGGTTTTAGTGTGTAAGTGCAA
TTTAGCAGGGGTAAAAGGGCTAACCTTTGGGTTTTTTTTTGTCGGGCGGG
CGGGGCTGCTACTTGCCCGAAACGATAGGGCCACTCGTTGCCTCTGTTGC
TAGAGTTCGAGAGGAACGTCCTTCGCCGTGTTCCTTTTTTTTGTCTTTTG
CTTCCCCACGGGCATTTGTTTAGAGTCTGAACGAACGGAAGAACGGCTTC
CCTTCGGGAGACCGACGGGGGCACCATCGTCCGTTGACTCTCTTCTTCTT
CTTCTTCTTCTTCTCTCTCTCTCCCTCTCTCTCCCCCCCCCCCTCTCTCA
ATCTCTCTCTCTTCTCTCTCTGCGTATCTCTCCGCTTCTCTCTCTCTCTC
TCTCCCTCTAAATGCAGTACAACAGTTTGACACCGCATCACACCGCATCA
CATCGCATCACATCACATCAAATCACGCCCAGCAGGACCTGCGAGACAAC
CGGCTGACGGACGTGGTTGTGCCGATGGTGGTGGAGGCCATTAAGTGATG
TGATGAGATGGGATGGGATGCGACGGGATTTGCCCTCTGAATGCAGTACA
ACAGTTTGACATCGCATCGCATCACATCACATCACATCAAGCAAATTGAT
GCGATGTGATGTGATGCGGCGTGATTTGCCCTCTGAAACGCAGTACTCAA
GTGCAACAGTTTGACATCGCATCACATCACGTCAAAATTGGCAGGACCTG
CGAGACAACAGGCTGACGGACGTGGCTGTTCAGATGGTGGTGGAGGCAAT
ATGCTCGTCCACGGATCACAGTGTGCAGGCGAGTTGAAGAAGCCGTGCGA
ATATTTTTGTTGTTGCCTTTGTTGTAATTATTGGCGATGATTCACATAAA
TTGTAGCGAGGTACAATCACATGTGTGTGAGATTGAGCGTTCTCGTATAG
GTGTTTTTCCCATTTAAGGATTGAATGTTGTGTTGGCGAGTTGAAGCTGT
CAGAGCATCTGTATCCATGATGTTTAAAACGACACACATTGCCTCTTGTC
CCCATACAAGACTCTTTACAGCCCCTTGTAGCCCTCTCGGTCTGAGGGAT
ATTCTCTAGCTCTCCTCATTACACCTTAGATATTTCTGCTCTTCTGCCAT
GGTCGGCACAGGCCCCCAGGCTTCACTGCCCTCTCTTAATGGCGGTAGTG
AACACAACAGCAGTGTGAGCACTTTTTGTTGTTGTTGCCCTTGTTGTGTT
GGCGAGTTCGGGGACCTAAGGCGTGGACCATCACCAGAAGAGTTCAGTTG
ACGCTTCTTCCACTCGCTAGTGCAATGTGATGTGATGTGCACTCTAATGT
GCGGTAGTGTGACATCACATCACATCACATCACATTTCATCGAAACTGGG
ACCTCAGCAGTAGAGTTCAGTTGACCCTTCTTCCACTCGCTAGTGCGATG
TGATGTGATGTGATGTGATGGGTACTGTAATGTACTGTACTATAGTGTGG
CATCATATCACATCACATCGCATCGAAAATGGGACCTCACCAGAAGAGCT
AAAGTTGACCCTTCTTCCACTCGCTGCTGTAGTGCAATGCGATGTGATGT
GATATGTACTCTAATGTACTGTGCAAGCAAGAGTAAAGAAGGGACGCCTG
CACTCTTCTCTGCCATCCATTACTAGCTTGTTCGTCTTCGTGCAAATAAC
CGCCGCGGTCATTTCGACGCCGCACAAGATTGCATCACACCACACAACGT
CGCGTCTCTTCTTTCCCACTCGCTTGTTCGTCTTCGTGCGAATAACCGCC
GCGGTCATATCGACGCCACACAAGATTGCATCACACCACACAACGTCGCT
AGTACGAGAACGCTCGACTATCCAAATGTGACAACCACGAATACGAGAAC
ACTTAATCTCACACATGTGCGACTGTACCCCGTTACAATTTGTATGGATC
ACCACATCGCATCATCAAAGCCATGACGGCACCGCCGCTTCGATCGATCG
AACAAAAGGCGTTGCACCCACTTTGTGGCGCAAGAGACCCCTTCTCCAAT
GTTATTCCTTTTCGCCCTGTCCCTCCCTTGCTATTCTTTATTTTCTGCTC
TGTATGCCGCGCGAGTGAAGGCGGGTGAAAGGAAGGGCTCCCGGGGGTCG
GGCCCTGAACTCACGTAAAGTAGGGACACCTCTTCTTTCCCACTCGCTTG
TTTATCTTTATGCAAAATAGCTCGCGATGGCAGCTACGGCGATTGTCAAA
GCTCATCTTGTATATTAGTAAAAAACAAAAAAGGCGCTGGACCTGTCTGA
TATAAAAGAAGGACACTCATAACTTATATTATATACATTCGCAAAACACA
AAAGGTGTTGGACCTGTCCGAGAACAAGCTGGATACAGTCTCGGCGCAGT
CACTGTGCGCCTTCCTCAAGAGCCCCACCTGCCAGCTGCGGGAGGTGATC
CTGGCCAAGGCAGACATGGACGACAACGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig7:3379464..3382093-

>mRNA_S-ischiensis_contig7.18307.1 ID=mRNA_S-ischiensis_contig7.18307.1|Name=mRNA_S-ischiensis_contig7.18307.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=678bp|location=Sequence derived from alignment at S-ischiensis_contig7:3379464..3382093- (Schizocladia ischiensis KU_0333)
ATGGCCCTGATTGGGCGGGGGGACGAGGGAGAGGAGCTGAACCTCCCCCA
CCAGTCTCTCGGGGACACGTACATCGAGCTCATTAGTGAGGTGATGGCCA
AGGGGCTGCTGCCCAACATGACCAAGCTGATGGCCCTGATTGGGCGGGGG
GACGAGGGAGAGGAGCTGAACCTCCCCCACCAGTCTCTCGGGGACACGTA
CATCGAGCTCATTAGTGAGGTGATGGCCAAGGGGCTGCTGCCCAACATGA
CCAAGCTGGACCTGCGAGACAACAGGCTGACGGACGTGGCTGTTCAGATG
GTGGTGGAGGCAATATGCTCGTCCACGGATCACAGTGTGCAGGACCTGCG
AGACAACAGGCTGACGGACGTGGCTGTTCAGATGGTGGTGGAGGCAATAT
GCTCGTCCACGGATCACAGTGTGCAGGTGTTGGACCTGTCCGAGAACAAG
CTGGATACAGTCTCGGCGCAGTCACTGTGCGCCTTCCTCAAGAGCCCCAC
CTGCCAGCTGCGGGAGGTGATCCTGGCCAAGGCAGACATGGACGACAACG
AGGTGTTGGACCTGTCCGAGAACAAGCTGGATACAGTCTCGGCGCAGTCA
CTGTGCGCCTTCCTCAAGAGCCCCACCTGCCAGCTGCGGGAGGTGATCCT
GGCCAAGGCAGACATGGACGACAACGAG
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