prot_S-ischiensis_contig127.2856.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig127.2856.1
Unique Nameprot_S-ischiensis_contig127.2856.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length77
Homology
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BLAST of mRNA_S-ischiensis_contig127.2856.1 vs. uniprot
Match: A0A2Z4MTA2_SACJA (HMG-box containing protein isoform 1 n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2Z4MTA2_SACJA)

HSP 1 Score: 92.4 bits (228), Expect = 2.490e-20
Identity = 42/63 (66.67%), Postives = 53/63 (84.13%), Query Frame = 0 
Query:    2 SIEQNNVINKVLGRLWKLATKDERRVYEEMATKDKLRYLREMKAYRPTQGYEREAPRINIPKG 64
            S+E NN INK+LG++WK AT+ E++ YEE AT DK+RYL+EM AYRP +GYER APRIN+PKG
Sbjct:  266 SLEHNNEINKMLGKVWKTATEQEKKTYEEKATADKVRYLKEMSAYRPPEGYERIAPRINVPKG 328
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig127.2856.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2Z4MTA2_SACJA2.490e-2066.67HMG-box containing protein isoform 1 n=1 Tax=Sacch... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 6..47
e-value: 3.7E-9
score: 36.9
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 1..47
score: 11.402
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10coord: 2..61
e-value: 5.3E-11
score: 44.7
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 6..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig127contigS-ischiensis_contig127:26690..27425 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig127.2856.1mRNA_S-ischiensis_contig127.2856.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig127 26683..27425 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig127.2856.1 ID=prot_S-ischiensis_contig127.2856.1|Name=mRNA_S-ischiensis_contig127.2856.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=77bp
MSIEQNNVINKVLGRLWKLATKDERRVYEEMATKDKLRYLREMKAYRPTQ
GYEREAPRINIPKGGDSKALALEFDTP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
IPR036910HMG_box_dom_sf