prot_S-ischiensis_contig116.2472.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig116.2472.1
Unique Nameprot_S-ischiensis_contig116.2472.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length116
Homology
BLAST of mRNA_S-ischiensis_contig116.2472.1 vs. uniprot
Match: A0A6H5JIT9_9PHAE (Urb2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIT9_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 5.200e-22
Identity = 60/109 (55.05%), Postives = 72/109 (66.06%), Query Frame = 0
Query:   11 ERQVKSAQALARVLHLFAAHRKVLKRYAPFLLAEYVSLVGGVAAEAAALEPGARGALQVGVFAVMDACTGYETLQLHGLL------DETGRAVYRALHDDYQLRHKYTG 113
            E QV +A   +RVL  F  H++VLK+YA FLL EYVSL G     AAALEP  R AL  GVFAVM AC+  E  QLHGLL        TG+ V+RAL+++YQL+HKY G
Sbjct: 2340 EEQVAAASVFSRVLEQFVPHKEVLKKYAAFLLLEYVSLAG-----AAALEPAPRAALLSGVFAVMQACSRREMRQLHGLLLGPSLPTGTGQQVFRALNEEYQLQHKYVG 2443          
BLAST of mRNA_S-ischiensis_contig116.2472.1 vs. uniprot
Match: L8HBW1_ACACA (Urb2 domain-containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HBW1_ACACA)

HSP 1 Score: 57.8 bits (138), Expect = 2.650e-7
Identity = 34/103 (33.01%), Postives = 55/103 (53.40%), Query Frame = 0
Query:   13 QVKSAQALARVLHLFAAHRKVLKRYAPFLLAEYVSLVGGVAAEAAALEPGARGALQVGVFAVMDACTGYETLQLHGLLDETGRAVYRALHDDYQLRHKYTGVV 115
            QV   + LAR+L   + H K   +Y   LL +Y+ L      E   L P  + AL  G++A++D C+ +E   +   +DETGRA+++ L ++Y    K+ G V
Sbjct: 1824 QVACTENLARLLEEMSKHPKQFNKYVAQLLVQYIQLT-----EVNPLSPATKQALLPGIYALLDICSEFEYKVISRQVDETGRAIFKKLFEEYHRDWKFQGKV 1921          
BLAST of mRNA_S-ischiensis_contig116.2472.1 vs. uniprot
Match: A0A8B8CNH6_CRAVI (LOW QUALITY PROTEIN: unhealthy ribosome biogenesis protein 2 homolog n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8CNH6_CRAVI)

HSP 1 Score: 50.4 bits (119), Expect = 9.570e-5
Identity = 33/106 (31.13%), Postives = 55/106 (51.89%), Query Frame = 0
Query:   14 VKSAQALARVLH----LFAAHRKVLKRYAPFLLAEYVSLVGGVAAEAAALEPGARGALQVGVFAVMDACTGYETLQLHGLLDETGRAVYRALHDDYQLRHKYTGVV 115
            +  A+  A +LH    L A+H++   + A ++ A YV+ V  V      L P  + AL   V++++D C  +   QLH +L +  + V++ L+ DY   H YTG V
Sbjct: 1403 ISDAKQCAHLLHKLYALIASHKQEFSKVAVYMTANYVTEVQRVT-----LHPVVKRALLPAVYSILDICDTHAVSQLHVVLSQGVKEVFKMLYADYLKYHHYTGKV 1503          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig116.2472.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JIT9_9PHAE5.200e-2255.05Urb2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
L8HBW1_ACACA2.650e-733.01Urb2 domain-containing protein n=1 Tax=Acanthamoeb... [more]
A0A8B8CNH6_CRAVI9.570e-531.13LOW QUALITY PROTEIN: unhealthy ribosome biogenesis... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018849Nucleolar 27S pre-rRNA processing, Urb2/Npa2, C-terminalPFAMPF10441Urb2coord: 8..113
e-value: 4.7E-21
score: 75.7
NoneNo IPR availablePANTHERPTHR15682FAMILY NOT NAMEDcoord: 8..115

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig116contigS-ischiensis_contig116:27836..28183 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig116.2472.1mRNA_S-ischiensis_contig116.2472.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig116 27836..28337 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig116.2472.1 ID=prot_S-ischiensis_contig116.2472.1|Name=mRNA_S-ischiensis_contig116.2472.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=116bp
QAAERGTARTERQVKSAQALARVLHLFAAHRKVLKRYAPFLLAEYVSLVG
GVAAEAAALEPGARGALQVGVFAVMDACTGYETLQLHGLLDETGRAVYRA
LHDDYQLRHKYTGVV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018849Urb2/Npa2_C