mRNA_S-ischiensis_contig116.2472.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig116.2472.1
Unique NamemRNA_S-ischiensis_contig116.2472.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig116.2472.1 vs. uniprot
Match: A0A6H5JIT9_9PHAE (Urb2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIT9_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 6.140e-21
Identity = 60/109 (55.05%), Postives = 72/109 (66.06%), Query Frame = 1 
Query:   31 ERQVKSAQALARVLHLFAAHRKVLKRYAPFLLAEYVSLVGGVAAEAAALEPGARGALQVGVFAVMDACTGYETLQLHGLL------DETGRAVYRALHDDYQLRHKYTG 339
            E QV +A   +RVL  F  H++VLK+YA FLL EYVSL G     AAALEP  R AL  GVFAVM AC+  E  QLHGLL        TG+ V+RAL+++YQL+HKY G
Sbjct: 2340 EEQVAAASVFSRVLEQFVPHKEVLKKYAAFLLLEYVSLAG-----AAALEPAPRAALLSGVFAVMQACSRREMRQLHGLLLGPSLPTGTGQQVFRALNEEYQLQHKYVG 2443
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BLAST of mRNA_S-ischiensis_contig116.2472.1 vs. uniprot
Match: L8HBW1_ACACA (Urb2 domain-containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HBW1_ACACA)

HSP 1 Score: 56.6 bits (135), Expect = 3.080e-6
Identity = 34/103 (33.01%), Postives = 55/103 (53.40%), Query Frame = 1 
Query:   37 QVKSAQALARVLHLFAAHRKVLKRYAPFLLAEYVSLVGGVAAEAAALEPGARGALQVGVFAVMDACTGYETLQLHGLLDETGRAVYRALHDDYQLRHKYTGVV 345
            QV   + LAR+L   + H K   +Y   LL +Y+ L      E   L P  + AL  G++A++D C+ +E   +   +DETGRA+++ L ++Y    K+ G V
Sbjct: 1824 QVACTENLARLLEEMSKHPKQFNKYVAQLLVQYIQLT-----EVNPLSPATKQALLPGIYALLDICSEFEYKVISRQVDETGRAIFKKLFEEYHRDWKFQGKV 1921
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig116.2472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JIT9_9PHAE6.140e-2155.05Urb2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
L8HBW1_ACACA3.080e-633.01Urb2 domain-containing protein n=1 Tax=Acanthamoeb... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig116contigS-ischiensis_contig116:27836..28337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score63.5
Seed ortholog evalue7.3e-08
Seed eggNOG ortholog3218.PP1S158_119V6.1
EggNOG free text desc.Urb2/Npa2 family
EggNOG OGs28Q0W@1,2QWPJ@2759,37Q83@33090,3GBPH@35493
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size503
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.2733319-CDS-S-ischiensis_contig116:27835..281831622815628.2733319-CDS-S-ischiensis_contig116:27835..28183Schizocladia ischiensis KU_0333CDSS-ischiensis_contig116 27836..28183 +
1695739813.857701-CDS-S-ischiensis_contig116:27835..281831695739813.857701-CDS-S-ischiensis_contig116:27835..28183Schizocladia ischiensis KU_0333CDSS-ischiensis_contig116 27836..28183 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.2833521-UTR-S-ischiensis_contig116:28183..283371622815628.2833521-UTR-S-ischiensis_contig116:28183..28337Schizocladia ischiensis KU_0333UTRS-ischiensis_contig116 28184..28337 +
1695739813.8693085-UTR-S-ischiensis_contig116:28183..283371695739813.8693085-UTR-S-ischiensis_contig116:28183..28337Schizocladia ischiensis KU_0333UTRS-ischiensis_contig116 28184..28337 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig116.2472.1prot_S-ischiensis_contig116.2472.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig116 27836..28183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig116.2472.1

>prot_S-ischiensis_contig116.2472.1 ID=prot_S-ischiensis_contig116.2472.1|Name=mRNA_S-ischiensis_contig116.2472.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=116bp
QAAERGTARTERQVKSAQALARVLHLFAAHRKVLKRYAPFLLAEYVSLVG
GVAAEAAALEPGARGALQVGVFAVMDACTGYETLQLHGLLDETGRAVYRA
LHDDYQLRHKYTGVV*
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mRNA from alignment at S-ischiensis_contig116:27836..28337+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig116.2472.1 ID=mRNA_S-ischiensis_contig116.2472.1|Name=mRNA_S-ischiensis_contig116.2472.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=502bp|location=Sequence derived from alignment at S-ischiensis_contig116:27836..28337+ (Schizocladia ischiensis KU_0333)
CAAGCCGCGGAAAGGGGAACAGCTCGGACGGAACGACAGGTCAAGTCAGC
ACAGGCTTTGGCGAGGGTCCTGCACCTGTTTGCAGCGCACCGGAAGGTGC
TGAAACGGTATGCTCCCTTCTTGCTGGCGGAGTACGTGTCGCTGGTGGGT
GGGGTGGCGGCGGAGGCTGCGGCGCTGGAGCCAGGAGCGCGGGGGGCGCT
CCAGGTGGGAGTCTTCGCGGTCATGGACGCGTGCACAGGTTATGAGACGC
TGCAGCTGCACGGCCTGCTGGACGAAACGGGCCGGGCCGTCTACCGCGCG
CTGCACGACGACTACCAGCTGCGGCACAAGTACACCGGAGTAGTATAGTT
GTACAGTAGTAAGTACTACTGAGTGTTGTACTGTATAGGCGCACAGTGCA
TACCTCGAAGCACAAGTATATCTTAGTTGCTGTCTTGGTAAGCCTGGTGA
CAGCGCAGTACCTCCACACCAGTACTACAGTAATTCAGACTTTGAAACAG
CT
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Coding sequence (CDS) from alignment at S-ischiensis_contig116:27836..28337+

>mRNA_S-ischiensis_contig116.2472.1 ID=mRNA_S-ischiensis_contig116.2472.1|Name=mRNA_S-ischiensis_contig116.2472.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=696bp|location=Sequence derived from alignment at S-ischiensis_contig116:27836..28337+ (Schizocladia ischiensis KU_0333)
CAAGCCGCGGAAAGGGGAACAGCTCGGACGGAACGACAGGTCAAGTCAGC
ACAGGCTTTGGCGAGGGTCCTGCACCTGTTTGCAGCGCACCGGAAGGTGC
TGAAACGGTATGCTCCCTTCTTGCTGGCGGAGTACGTGTCGCTGGTGGGT
GGGGTGGCGGCGGAGGCTGCGGCGCTGGAGCCAGGAGCGCGGGGGGCGCT
CCAGGTGGGAGTCTTCGCGGTCATGGACGCGTGCACAGGTTATGAGACGC
TGCAGCTGCACGGCCTGCTGGACGAAACGGGCCGGGCCGTCTACCGCGCG
CTGCACGACGACTACCAGCTGCGGCACAAGTACACCGGAGTAGTATAGCA
AGCCGCGGAAAGGGGAACAGCTCGGACGGAACGACAGGTCAAGTCAGCAC
AGGCTTTGGCGAGGGTCCTGCACCTGTTTGCAGCGCACCGGAAGGTGCTG
AAACGGTATGCTCCCTTCTTGCTGGCGGAGTACGTGTCGCTGGTGGGTGG
GGTGGCGGCGGAGGCTGCGGCGCTGGAGCCAGGAGCGCGGGGGGCGCTCC
AGGTGGGAGTCTTCGCGGTCATGGACGCGTGCACAGGTTATGAGACGCTG
CAGCTGCACGGCCTGCTGGACGAAACGGGCCGGGCCGTCTACCGCGCGCT
GCACGACGACTACCAGCTGCGGCACAAGTACACCGGAGTAGTATAG
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