prot_S-ischiensis_contig11.2350.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-ischiensis_contig11.2350.1
Unique Name	prot_S-ischiensis_contig11.2350.1
Type	polypeptide
Organism	Schizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length	649

Homology

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BLAST of mRNA_S-ischiensis_contig11.2350.1 vs. uniprot
Match: D7FPC7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPC7_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 8.230e-42
Identity = 89/174 (51.15%), Postives = 115/174 (66.09%), Query Frame = 0

Query:  458 GGETTPFYLAVVFIVVPTLAVCTSTIVAPYTGSGRASSHRRIKAKKVVLTVLQLRLLHEARQGLREREETRDFKTTKFIEACFEAAPQMLLQAVTLIDLWD--AGGEPDRVVMLSVVMSLLSLSWEATNSLDRGWAEAEVAERKVKGRVWCGSVDAHRGLLLLLLWMYHICEVG 629
            G +   F LAV+FIVVPT  V  ST+         + S  R + KK++LTVLQLRL+ EAR GL++R ETRD+KT KF+EACFEAAPQMLLQ V ++ LW+       D  V  S++ S+ S+SWE  ++LDRGWAE  V ER  +G  W     AHR L+LL LW++H+CEVG
Sbjct:  186 GSDVLSFVLAVIFIVVPTSVVVASTM---------SGSRERDRNKKILLTVLQLRLVWEARDGLKKRRETRDYKTAKFVEACFEAAPQMLLQTVAVVSLWNDKETDNSDAFVAFSIMNSVFSVSWETMSALDRGWAEEMVEERARQGTSWPCGASAHRWLVLLSLWVFHVCEVG 350

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BLAST of mRNA_S-ischiensis_contig11.2350.1 vs. uniprot
Match: A0A6H5L3J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3J2_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.430e-26
Identity = 61/117 (52.14%), Postives = 80/117 (68.38%), Query Frame = 0

Query:  511 LRLLHEARQGLREREETRDFKTTKFIEACFEAAPQMLLQAVTLIDLWD--AGGEPDRVVMLSVVMSLLSLSWEATNSLDRGWAEAEVAERKVKGRVWCGSVDAHRGLLLLLLWMYHI 625
            LRL+ EAR GL++  ETRD+KT KF+EACFEAAPQMLLQ V ++ LW+       D  V  S++ S+ S+SWE  ++LDRGWAE  V ER  +G  W     AHR L+LL LW++H+
Sbjct:  241 LRLVWEARDGLKKGRETRDYKTAKFVEACFEAAPQMLLQTVAVVSLWNDKEADNSDMFVAFSIMNSVFSVSWETMSALDRGWAEEMVEERARQGTSWPCGASAHRWLVLLSLWVFHV 357

The following BLAST results are available for this feature:

BLAST of mRNA_S-ischiensis_contig11.2350.1 vs. uniprot

BLAST of mRNA_S-ischiensis_contig11.2350.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FPC7_ECTSI	8.230e-42	51.15	Hypothetical leucine rich repeat protein n=1 Tax=E...	[more]
A0A6H5L3J2_9PHAE	1.430e-26	52.14	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003591	Leucine-rich repeat, typical subtype	SMART	SM00369	LRR_typ_2	coord: 275..299 e-value: 18.0 score: 11.2 coord: 371..395 e-value: 69.0 score: 6.4 coord: 227..251 e-value: 29.0 score: 9.4 coord: 323..347 e-value: 140.0 score: 3.8
IPR018629	XK-related protein	PFAM	PF09815	XK-related	coord: 434..583 e-value: 6.5E-14 score: 51.7
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10		coord: 200..408 e-value: 3.5E-59 score: 202.5
None	No IPR available	PANTHER	PTHR27000	FAMILY NOT NAMED	coord: 206..418
None	No IPR available	PANTHER	PTHR27000	FAMILY NOT NAMED	coord: 193..355
None	No IPR available	PANTHER	PTHR27000:SF642		coord: 206..418
None	No IPR available	PANTHER	PTHR27000:SF642		coord: 193..355
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 433..456
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 457..461
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 462..488
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 489..648
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..432
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 193..392
None	No IPR available	TMHMM	TMhelix		coord: 463..485
None	No IPR available	TMHMM	TMhelix		coord: 434..456

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-ischiensis_contig11	contig	S-ischiensis_contig11:3238838..3251561 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Schizocladia ischiensis KU_0333	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-ischiensis_contig11.2350.1	mRNA_S-ischiensis_contig11.2350.1	Schizocladia ischiensis KU_0333	mRNA	S-ischiensis_contig11 3238802..3252016 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-ischiensis_contig11.2350.1 ID=prot_S-ischiensis_contig11.2350.1|Name=mRNA_S-ischiensis_contig11.2350.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=649bp
MTSEASPTEREAGILLDLYAFTQGHSWRTRYGWSEAAAARHAQANRGPAS
TSNPFADQTPSFNPFVLDDVGDGARGHRWGGLQQQQQQESSRAGPPAPTA
SSPQSANPFAPRGSLNPFASEGAPLPAMAGSSPAARPGSNTSAAGASFGR
GRAAAAGTASATPTSAASTAGSGASYGDTLGLSRVPDASPGGSVWYGVTR
DRRSRVTELKLGDNRLSGPLPAGLGGMERLRYLHVGHNKLSGTLPPALGD
ASRLEWLAVHENYLTGPVPAELGGLDRLVELNLSCNRLSGALPPELGRLA
CLMSLQASHNLLTGKLPDEICNLSELCTLSLEHNALSGRVPAGVANMKQL
RQLRLDHNQFEGKIPLQLGKMPSLQLVMLSHNKLRGSIPEALVKRMGPAK
ILDCVAPGNRLADIGTAMMLCTRPLDAALDRALMWFSVLAGYFDLLTDVA
AAYAFYDGGETTPFYLAVVFIVVPTLAVCTSTIVAPYTGSGRASSHRRIK
AKKVVLTVLQLRLLHEARQGLREREETRDFKTTKFIEACFEAAPQMLLQA
VTLIDLWDAGGEPDRVVMLSVVMSLLSLSWEATNSLDRGWAEAEVAERKV
KGRVWCGSVDAHRGLLLLLLWMYHICEVGWVPQWNLASYFYTREIQKR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003591	Leu-rich_rpt_typical-subtyp
IPR018629	XK-rel
IPR032675	LRR_dom_sf