mRNA_S-ischiensis_contig11.2350.1 (mRNA) Schizocladia ischiensis KU_0333
|
Overview
Homology
BLAST of mRNA_S-ischiensis_contig11.2350.1 vs. uniprot
Match: D7FPC7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPC7_ECTSI) HSP 1 Score: 169 bits (428), Expect = 3.560e-41 Identity = 89/174 (51.15%), Postives = 115/174 (66.09%), Query Frame = 1
Query: 1408 GGETTPFYLAVVFIVVPTLAVCTSTIVAPYTGSGRASSHRRIKAKKVVLTVLQLRLLHEARQGLREREETRDFKTTKFIEACFEAAPQMLLQAVTLIDLWD--AGGEPDRVVMLSVVMSLLSLSWEATNSLDRGWAEAEVAERKVKGRVWCGSVDAHRGLLLLLLWMYHICEVG 1923
G + F LAV+FIVVPT V ST+ + S R + KK++LTVLQLRL+ EAR GL++R ETRD+KT KF+EACFEAAPQMLLQ V ++ LW+ D V S++ S+ S+SWE ++LDRGWAE V ER +G W AHR L+LL LW++H+CEVG
Sbjct: 186 GSDVLSFVLAVIFIVVPTSVVVASTM---------SGSRERDRNKKILLTVLQLRLVWEARDGLKKRRETRDYKTAKFVEACFEAAPQMLLQTVAVVSLWNDKETDNSDAFVAFSIMNSVFSVSWETMSALDRGWAEEMVEERARQGTSWPCGASAHRWLVLLSLWVFHVCEVG 350
BLAST of mRNA_S-ischiensis_contig11.2350.1 vs. uniprot
Match: A0A6H5L3J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3J2_9PHAE) HSP 1 Score: 125 bits (313), Expect = 2.630e-26 Identity = 61/117 (52.14%), Postives = 80/117 (68.38%), Query Frame = 1
Query: 1567 LRLLHEARQGLREREETRDFKTTKFIEACFEAAPQMLLQAVTLIDLWD--AGGEPDRVVMLSVVMSLLSLSWEATNSLDRGWAEAEVAERKVKGRVWCGSVDAHRGLLLLLLWMYHI 1911
LRL+ EAR GL++ ETRD+KT KF+EACFEAAPQMLLQ V ++ LW+ D V S++ S+ S+SWE ++LDRGWAE V ER +G W AHR L+LL LW++H+
Sbjct: 241 LRLVWEARDGLKKGRETRDYKTAKFVEACFEAAPQMLLQTVAVVSLWNDKEADNSDMFVAFSIMNSVFSVSWETMSALDRGWAEEMVEERARQGTSWPCGASAHRWLVLLSLWVFHV 357 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig11.2350.1 >prot_S-ischiensis_contig11.2350.1 ID=prot_S-ischiensis_contig11.2350.1|Name=mRNA_S-ischiensis_contig11.2350.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=649bp MTSEASPTEREAGILLDLYAFTQGHSWRTRYGWSEAAAARHAQANRGPASback to top mRNA from alignment at S-ischiensis_contig11:3238802..3252016+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig11.2350.1 ID=mRNA_S-ischiensis_contig11.2350.1|Name=mRNA_S-ischiensis_contig11.2350.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=13215bp|location=Sequence derived from alignment at S-ischiensis_contig11:3238802..3252016+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig11:3238802..3252016+ >mRNA_S-ischiensis_contig11.2350.1 ID=mRNA_S-ischiensis_contig11.2350.1|Name=mRNA_S-ischiensis_contig11.2350.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=3894bp|location=Sequence derived from alignment at S-ischiensis_contig11:3238802..3252016+ (Schizocladia ischiensis KU_0333)back to top |