prot_S-ischiensis_contig11.2121.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig11.2121.1
Unique Nameprot_S-ischiensis_contig11.2121.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length146
Homology
BLAST of mRNA_S-ischiensis_contig11.2121.1 vs. uniprot
Match: A0A6H5JPL2_9PHAE (RTP1_C1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL2_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 6.390e-20
Identity = 62/116 (53.45%), Postives = 76/116 (65.52%), Query Frame = 0
Query:    7 EEARG-RLLEAVAAAKQDLLSDEPPMRARGVVTLTRLVRAA----------------SRQAVDTALADRLLDTLASAAGDPDSYVYLAAVQGLAALANASPAHCIPRLVGLFLGRA 105
            EEAR  R++ A+ AA++DL S+  P+RARGVVTLTRL+RA                  R  +DTA+A+RL+DT     GD DSYVYLAAVQGLAALA+A P   IPRLVG+F   A
Sbjct: 1087 EEARAARMMSALDAAEEDLRSEAVPLRARGVVTLTRLMRATLDGSPSGGXXXXXXXXXRVNMDTAVAERLIDTYTRMTGDGDSYVYLAAVQGLAALADALPGWSIPRLVGIFTATA 1202          
BLAST of mRNA_S-ischiensis_contig11.2121.1 vs. uniprot
Match: A0A835YW23_9STRA (RTP1_C1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW23_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 4.490e-13
Identity = 49/103 (47.57%), Postives = 66/103 (64.08%), Query Frame = 0
Query:    4 ASLEEARGRLLEAVAAAKQDLLSDEPPMRARGVVTLTRLVR---AASRQAVDTALADRLLDTLASAAGDPDSYVYLAAVQGLAALANASPAHCIPRLVGLFLG 103
            ASLEE   R+  A+   ++DL S + P+RARGVVTLTRL+R   A S +     + D+ +D     A D +SYVYLAAVQGL+ L++ SP + IP LV +F G
Sbjct:  800 ASLEE---RMAAALVDVQEDLSSAQVPLRARGVVTLTRLLRELTAESTRVASLDVLDKFVDIYVLMAQDEESYVYLAAVQGLSVLSDVSPGYVIPTLVSIFCG 899          
BLAST of mRNA_S-ischiensis_contig11.2121.1 vs. uniprot
Match: D7FHX3_ECTSI (RTP1_C1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHX3_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 2.560e-11
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 0
Query:   51 VDTALADRLLDTLASAAGDPDSYVYLAAVQGLAALANASPAHCIPRLVGLFLGRA 105
            +DTA+A+RL+DT A  AGD DSYVYLAAVQGLAALA+A P   IPRLVG+F   A
Sbjct: 1157 MDTAVAERLMDTYARMAGDGDSYVYLAAVQGLAALADALPGWSIPRLVGIFTAAA 1211          
BLAST of mRNA_S-ischiensis_contig11.2121.1 vs. uniprot
Match: A0A5D6Y2F3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y2F3_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.170e-10
Identity = 45/89 (50.56%), Postives = 56/89 (62.92%), Query Frame = 0
Query:   20 AKQDLLSDEPPMRARGVVTLTRLVRAASRQAVD---TALADRLLDTLASAAGDPDSYVYLAAVQGLAALANASPAHCIPRLVGLFLGRA 105
            A+ DL S   P+RARGVVTLT+LVRA+ +Q  D   T    RL+    +   DP+SYV+LAAVQGLAALA+A     IP LV     R+
Sbjct:  750 AQTDLKSTLVPLRARGVVTLTKLVRASQQQRCDPAWTPRVQRLVGLFLAHLDDPESYVFLAAVQGLAALADAHADVAIPLLVAALRDRS 838          
BLAST of mRNA_S-ischiensis_contig11.2121.1 vs. uniprot
Match: D0MTC1_PHYIT (RTP1_C1 domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MTC1_PHYIT)

HSP 1 Score: 64.7 bits (156), Expect = 2.550e-9
Identity = 46/92 (50.00%), Postives = 54/92 (58.70%), Query Frame = 0
Query:   10 RGRLLEAVAAAKQDLLSDEPPMRARGVVTLTRLVRAASRQAVDTALADR---LLDTLASAAGDPDSYVYLAAVQGLAALANASPAHCIPRLV 98
            RG   +    A+QDL S   P+RARGVVTLTRLVR +   A +     R   L         D +SYV+LAAVQGLAALA+A PA  IP LV
Sbjct:  654 RGSFEKVFRKAEQDLSSQLVPLRARGVVTLTRLVRRSLSHAHEAEWTPRVHSLAQVFLLHLHDSESYVFLAAVQGLAALADAHPAAAIPALV 745          
BLAST of mRNA_S-ischiensis_contig11.2121.1 vs. uniprot
Match: A0A484DYQ8_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DYQ8_BRELC)

HSP 1 Score: 63.9 bits (154), Expect = 4.770e-9
Identity = 41/82 (50.00%), Postives = 52/82 (63.41%), Query Frame = 0
Query:   20 AKQDLLSDEPPMRARGVVTLTRLVRAASRQAVDTALADR---LLDTLASAAGDPDSYVYLAAVQGLAALANASPAHCIPRLV 98
            A+QDL S   P+RARGVV+LT++VR + R   DTA   R   L         D +SYV+LAA+QGLA LA+A P+  IP LV
Sbjct:  758 AEQDLTSTSVPLRARGVVSLTKIVRESRRHTHDTAWTPRVNVLARIFLLQLNDAESYVFLAAIQGLATLAHAYPSVAIPVLV 839          
BLAST of mRNA_S-ischiensis_contig11.2121.1 vs. uniprot
Match: A0A0P1AB77_PLAHL (Syntaxin-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AB77_PLAHL)

HSP 1 Score: 63.5 bits (153), Expect = 6.610e-9
Identity = 45/87 (51.72%), Postives = 53/87 (60.92%), Query Frame = 0
Query:   15 EAVAAAKQDLLSDEPPMRARGVVTLTRLVRAASRQAVDTALADR---LLDTLASAAGDPDSYVYLAAVQGLAALANASPAHCIPRLV 98
            E + +A+QD LS   P+RARGVVTLT+LVR +     DT    R   L         D +SYVYLAAVQGLAALA+A P   IP LV
Sbjct: 1059 EVLQSAEQDFLSKLVPLRARGVVTLTKLVRRSHMHNHDTEWTPRVHALARVFLLKLHDSESYVYLAAVQGLAALADAHPDVAIPVLV 1145          
BLAST of mRNA_S-ischiensis_contig11.2121.1 vs. uniprot
Match: G4ZD77_PHYSP (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4ZD77_PHYSP)

HSP 1 Score: 62.4 bits (150), Expect = 1.620e-8
Identity = 44/86 (51.16%), Postives = 52/86 (60.47%), Query Frame = 0
Query:   20 AKQDLLSDEPPMRARGVVTLTRLVRAASRQAVDTALADR---LLDTLASAAGDPDSYVYLAAVQGLAALANASPAHCIPRLVGLFL 102
            A+QDL S+  P+RARGVVTLT+LVR +   A D     R   L         D +SYV+LAAVQGLAALA+A P   IP LV   L
Sbjct:  663 AEQDLSSELVPLRARGVVTLTKLVRRSHAHAHDAEWTPRVHALARVFLLHLYDSESYVFLAAVQGLAALADAHPDVAIPALVKALL 748          
BLAST of mRNA_S-ischiensis_contig11.2121.1 vs. uniprot
Match: A0A0W8CBZ8_PHYNI (Transport and Golgi organization protein 6 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CBZ8_PHYNI)

HSP 1 Score: 62.0 bits (149), Expect = 2.220e-8
Identity = 43/82 (52.44%), Postives = 50/82 (60.98%), Query Frame = 0
Query:   20 AKQDLLSDEPPMRARGVVTLTRLVRAASRQAVDTALADR---LLDTLASAAGDPDSYVYLAAVQGLAALANASPAHCIPRLV 98
            A+QDL S   P+RARGVVTLT+LVR +   A D     R   L         D +SYV+LAAVQGLAALA+A P   IP LV
Sbjct:  715 AEQDLSSQLVPLRARGVVTLTKLVRRSHTHAHDADWTPRVHALAQVFLLHLHDSESYVFLAAVQGLAALADAHPDVAIPALV 796          
BLAST of mRNA_S-ischiensis_contig11.2121.1 vs. uniprot
Match: A0A329SR12_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SR12_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.230e-8
Identity = 42/82 (51.22%), Postives = 49/82 (59.76%), Query Frame = 0
Query:   20 AKQDLLSDEPPMRARGVVTLTRLVRAASRQAVDTALADR---LLDTLASAAGDPDSYVYLAAVQGLAALANASPAHCIPRLV 98
            A+QDL S   P+RARGVVTLT+LVR +     D     R   L         D +SYVYLAAVQGLAALA+A P   +P LV
Sbjct:  765 AEQDLSSQLVPLRARGVVTLTKLVRRSHSHVHDAEWTPRVHALAQVFLLHLHDSESYVYLAAVQGLAALADAHPNVAVPALV 846          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2121.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPL2_9PHAE6.390e-2053.45RTP1_C1 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835YW23_9STRA4.490e-1347.57RTP1_C1 domain-containing protein n=1 Tax=Tribonem... [more]
D7FHX3_ECTSI2.560e-1169.09RTP1_C1 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A5D6Y2F3_9STRA2.170e-1050.56Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
D0MTC1_PHYIT2.550e-950.00RTP1_C1 domain-containing protein n=2 Tax=Phytopht... [more]
A0A484DYQ8_BRELC4.770e-950.00Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A0P1AB77_PLAHL6.610e-951.72Syntaxin-like protein n=1 Tax=Plasmopara halstedii... [more]
G4ZD77_PHYSP1.620e-851.16Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A0W8CBZ8_PHYNI2.220e-852.44Transport and Golgi organization protein 6 n=1 Tax... [more]
A0A329SR12_9STRA2.230e-851.22Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019451RNA polymerase II assembly factor Rtp1, C-terminalPFAMPF10363RTP1_C1coord: 20..101
e-value: 1.0E-18
score: 67.5
IPR039600TANGO6/Rtp1PANTHERPTHR20959UNCHARACTERIZEDcoord: 22..108
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 13..95

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:1329933..1331386 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2121.1mRNA_S-ischiensis_contig11.2121.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig11 1329933..1331388 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig11.2121.1 ID=prot_S-ischiensis_contig11.2121.1|Name=mRNA_S-ischiensis_contig11.2121.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=146bp
GGEASLEEARGRLLEAVAAAKQDLLSDEPPMRARGVVTLTRLVRAASRQA
VDTALADRLLDTLASAAGDPDSYVYLAAVQGLAALANASPAHCIPRLVGL
FLGRAPPPPPPPPPSPPPIIMRTTRPVTLLAPVEQRNGGGRGGAEA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019451Rtp1_C1
IPR039600TANGO6/Rtp1
IPR016024ARM-type_fold