mRNA_S-ischiensis_contig11.2121.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2121.1
Unique NamemRNA_S-ischiensis_contig11.2121.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig11.2121.1 vs. uniprot
Match: A0A6H5JPL2_9PHAE (RTP1_C1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL2_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 6.390e-20
Identity = 62/116 (53.45%), Postives = 76/116 (65.52%), Query Frame = 1 
Query:   19 EEARG-RLLEAVAAAKQDLLSDEPPMRARGVVTLTRLVRAA----------------SRQAVDTALADRLLDTLASAAGDPDSYVYLAAVQGLAALANASPAHCIPRLVGLFLGRA 315
            EEAR  R++ A+ AA++DL S+  P+RARGVVTLTRL+RA                  R  +DTA+A+RL+DT     GD DSYVYLAAVQGLAALA+A P   IPRLVG+F   A
Sbjct: 1087 EEARAARMMSALDAAEEDLRSEAVPLRARGVVTLTRLMRATLDGSPSGGXXXXXXXXXRVNMDTAVAERLIDTYTRMTGDGDSYVYLAAVQGLAALADALPGWSIPRLVGIFTATA 1202
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BLAST of mRNA_S-ischiensis_contig11.2121.1 vs. uniprot
Match: A0A835YW23_9STRA (RTP1_C1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW23_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 4.490e-13
Identity = 49/103 (47.57%), Postives = 66/103 (64.08%), Query Frame = 1 
Query:   10 ASLEEARGRLLEAVAAAKQDLLSDEPPMRARGVVTLTRLVR---AASRQAVDTALADRLLDTLASAAGDPDSYVYLAAVQGLAALANASPAHCIPRLVGLFLG 309
            ASLEE   R+  A+   ++DL S + P+RARGVVTLTRL+R   A S +     + D+ +D     A D +SYVYLAAVQGL+ L++ SP + IP LV +F G
Sbjct:  800 ASLEE---RMAAALVDVQEDLSSAQVPLRARGVVTLTRLLRELTAESTRVASLDVLDKFVDIYVLMAQDEESYVYLAAVQGLSVLSDVSPGYVIPTLVSIFCG 899
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BLAST of mRNA_S-ischiensis_contig11.2121.1 vs. uniprot
Match: D7FHX3_ECTSI (RTP1_C1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHX3_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 2.560e-11
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:  151 VDTALADRLLDTLASAAGDPDSYVYLAAVQGLAALANASPAHCIPRLVGLFLGRA 315
            +DTA+A+RL+DT A  AGD DSYVYLAAVQGLAALA+A P   IPRLVG+F   A
Sbjct: 1157 MDTAVAERLMDTYARMAGDGDSYVYLAAVQGLAALADALPGWSIPRLVGIFTAAA 1211
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BLAST of mRNA_S-ischiensis_contig11.2121.1 vs. uniprot
Match: A0A5D6Y2F3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y2F3_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.170e-10
Identity = 45/89 (50.56%), Postives = 56/89 (62.92%), Query Frame = 1 
Query:   58 AKQDLLSDEPPMRARGVVTLTRLVRAASRQAVD---TALADRLLDTLASAAGDPDSYVYLAAVQGLAALANASPAHCIPRLVGLFLGRA 315
            A+ DL S   P+RARGVVTLT+LVRA+ +Q  D   T    RL+    +   DP+SYV+LAAVQGLAALA+A     IP LV     R+
Sbjct:  750 AQTDLKSTLVPLRARGVVTLTKLVRASQQQRCDPAWTPRVQRLVGLFLAHLDDPESYVFLAAVQGLAALADAHADVAIPLLVAALRDRS 838
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BLAST of mRNA_S-ischiensis_contig11.2121.1 vs. uniprot
Match: D0MTC1_PHYIT (RTP1_C1 domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MTC1_PHYIT)

HSP 1 Score: 64.7 bits (156), Expect = 2.550e-9
Identity = 46/92 (50.00%), Postives = 54/92 (58.70%), Query Frame = 1 
Query:   28 RGRLLEAVAAAKQDLLSDEPPMRARGVVTLTRLVRAASRQAVDTALADR---LLDTLASAAGDPDSYVYLAAVQGLAALANASPAHCIPRLV 294
            RG   +    A+QDL S   P+RARGVVTLTRLVR +   A +     R   L         D +SYV+LAAVQGLAALA+A PA  IP LV
Sbjct:  654 RGSFEKVFRKAEQDLSSQLVPLRARGVVTLTRLVRRSLSHAHEAEWTPRVHSLAQVFLLHLHDSESYVFLAAVQGLAALADAHPAAAIPALV 745
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BLAST of mRNA_S-ischiensis_contig11.2121.1 vs. uniprot
Match: A0A484DYQ8_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DYQ8_BRELC)

HSP 1 Score: 63.9 bits (154), Expect = 4.770e-9
Identity = 41/82 (50.00%), Postives = 52/82 (63.41%), Query Frame = 1 
Query:   58 AKQDLLSDEPPMRARGVVTLTRLVRAASRQAVDTALADR---LLDTLASAAGDPDSYVYLAAVQGLAALANASPAHCIPRLV 294
            A+QDL S   P+RARGVV+LT++VR + R   DTA   R   L         D +SYV+LAA+QGLA LA+A P+  IP LV
Sbjct:  758 AEQDLTSTSVPLRARGVVSLTKIVRESRRHTHDTAWTPRVNVLARIFLLQLNDAESYVFLAAIQGLATLAHAYPSVAIPVLV 839
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BLAST of mRNA_S-ischiensis_contig11.2121.1 vs. uniprot
Match: A0A0P1AB77_PLAHL (Syntaxin-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AB77_PLAHL)

HSP 1 Score: 63.5 bits (153), Expect = 6.610e-9
Identity = 45/87 (51.72%), Postives = 53/87 (60.92%), Query Frame = 1 
Query:   43 EAVAAAKQDLLSDEPPMRARGVVTLTRLVRAASRQAVDTALADR---LLDTLASAAGDPDSYVYLAAVQGLAALANASPAHCIPRLV 294
            E + +A+QD LS   P+RARGVVTLT+LVR +     DT    R   L         D +SYVYLAAVQGLAALA+A P   IP LV
Sbjct: 1059 EVLQSAEQDFLSKLVPLRARGVVTLTKLVRRSHMHNHDTEWTPRVHALARVFLLKLHDSESYVYLAAVQGLAALADAHPDVAIPVLV 1145
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BLAST of mRNA_S-ischiensis_contig11.2121.1 vs. uniprot
Match: G4ZD77_PHYSP (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4ZD77_PHYSP)

HSP 1 Score: 62.4 bits (150), Expect = 1.620e-8
Identity = 44/86 (51.16%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:   58 AKQDLLSDEPPMRARGVVTLTRLVRAASRQAVDTALADR---LLDTLASAAGDPDSYVYLAAVQGLAALANASPAHCIPRLVGLFL 306
            A+QDL S+  P+RARGVVTLT+LVR +   A D     R   L         D +SYV+LAAVQGLAALA+A P   IP LV   L
Sbjct:  663 AEQDLSSELVPLRARGVVTLTKLVRRSHAHAHDAEWTPRVHALARVFLLHLYDSESYVFLAAVQGLAALADAHPDVAIPALVKALL 748
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BLAST of mRNA_S-ischiensis_contig11.2121.1 vs. uniprot
Match: A0A0W8CBZ8_PHYNI (Transport and Golgi organization protein 6 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CBZ8_PHYNI)

HSP 1 Score: 62.0 bits (149), Expect = 2.220e-8
Identity = 43/82 (52.44%), Postives = 50/82 (60.98%), Query Frame = 1 
Query:   58 AKQDLLSDEPPMRARGVVTLTRLVRAASRQAVDTALADR---LLDTLASAAGDPDSYVYLAAVQGLAALANASPAHCIPRLV 294
            A+QDL S   P+RARGVVTLT+LVR +   A D     R   L         D +SYV+LAAVQGLAALA+A P   IP LV
Sbjct:  715 AEQDLSSQLVPLRARGVVTLTKLVRRSHTHAHDADWTPRVHALAQVFLLHLHDSESYVFLAAVQGLAALADAHPDVAIPALV 796
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BLAST of mRNA_S-ischiensis_contig11.2121.1 vs. uniprot
Match: A0A329SR12_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SR12_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.230e-8
Identity = 42/82 (51.22%), Postives = 49/82 (59.76%), Query Frame = 1 
Query:   58 AKQDLLSDEPPMRARGVVTLTRLVRAASRQAVDTALADR---LLDTLASAAGDPDSYVYLAAVQGLAALANASPAHCIPRLV 294
            A+QDL S   P+RARGVVTLT+LVR +     D     R   L         D +SYVYLAAVQGLAALA+A P   +P LV
Sbjct:  765 AEQDLSSQLVPLRARGVVTLTKLVRRSHSHVHDAEWTPRVHALAQVFLLHLHDSESYVYLAAVQGLAALADAHPNVAVPALV 846
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPL2_9PHAE6.390e-2053.45RTP1_C1 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835YW23_9STRA4.490e-1347.57RTP1_C1 domain-containing protein n=1 Tax=Tribonem... [more]
D7FHX3_ECTSI2.560e-1169.09RTP1_C1 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A5D6Y2F3_9STRA2.170e-1050.56Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
D0MTC1_PHYIT2.550e-950.00RTP1_C1 domain-containing protein n=2 Tax=Phytopht... [more]
A0A484DYQ8_BRELC4.770e-950.00Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A0P1AB77_PLAHL6.610e-951.72Syntaxin-like protein n=1 Tax=Plasmopara halstedii... [more]
G4ZD77_PHYSP1.620e-851.16Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A0W8CBZ8_PHYNI2.220e-852.44Transport and Golgi organization protein 6 n=1 Tax... [more]
A0A329SR12_9STRA2.230e-851.22Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:1329933..1331388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue3.4e-10
Seed eggNOG ortholog2880.D7FHX3
Preferred nameTANGO6
KEGG rclassRC00961
KEGG koko:K01763,ko:K08489
KEGG ReactionR03599
KEGG Pathwayko00450,ko01100,ko04130,map00450,map01100,map04130
GOsGO:0002790,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005829,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007030,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0032940,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594
EggNOG free text desc.protein transport
EggNOG OGsKOG4653@1,KOG4653@2759
EC4.4.1.16
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size440
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815599.2336395-CDS-S-ischiensis_contig11:1329932..13300541622815599.2336395-CDS-S-ischiensis_contig11:1329932..1330054Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1329933..1330054 +
1695739794.8371496-CDS-S-ischiensis_contig11:1329932..13300541695739794.8371496-CDS-S-ischiensis_contig11:1329932..1330054Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1329933..1330054 +
1622815599.3283384-CDS-S-ischiensis_contig11:1331070..13313861622815599.3283384-CDS-S-ischiensis_contig11:1331070..1331386Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1331071..1331386 +
1695739794.8506293-CDS-S-ischiensis_contig11:1331070..13313861695739794.8506293-CDS-S-ischiensis_contig11:1331070..1331386Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1331071..1331386 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2121.1prot_S-ischiensis_contig11.2121.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 1329933..1331386 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2121.1

>prot_S-ischiensis_contig11.2121.1 ID=prot_S-ischiensis_contig11.2121.1|Name=mRNA_S-ischiensis_contig11.2121.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=146bp
GGEASLEEARGRLLEAVAAAKQDLLSDEPPMRARGVVTLTRLVRAASRQA
VDTALADRLLDTLASAAGDPDSYVYLAAVQGLAALANASPAHCIPRLVGL
FLGRAPPPPPPPPPSPPPIIMRTTRPVTLLAPVEQRNGGGRGGAEA
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mRNA from alignment at S-ischiensis_contig11:1329933..1331388+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2121.1 ID=mRNA_S-ischiensis_contig11.2121.1|Name=mRNA_S-ischiensis_contig11.2121.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1456bp|location=Sequence derived from alignment at S-ischiensis_contig11:1329933..1331388+ (Schizocladia ischiensis KU_0333)
GGGGGGGAGGCTTCACTGGAGGAGGCAAGGGGCCGCCTTCTGGAGGCGGT
TGCGGCGGCCAAGCAGGATCTTCTGAGCGACGAGCCCCCCATGAGGGCCC
GGGGGGTCGTGACGCTCACGAGGTGAGTGCGGTACTAGACGAGCAGGGGG
CGGGGGCAGGGGCGGGGGGCAGTGTGCTGGTGGTTTTGCGGTTGGTAGAG
TAGAGGAGTGCTGATGGTCGCTGCGGCGGTCGGGGTGGGGGCGGCGGCGA
GCGACGCAATCTGCCTTGTTGCCCCCGGGTGGTGGCAGCGGCGGCGGCGG
CGGCAGCGGCGCCGGGGGACGCGCACGCGGACGCATGTCGCGGGCAATGC
AGGCCTTGCGGCTGGGACAGGGGACAGGGTTGGGACGGGAAAGGAGCATT
TCAGCCCCAAGTAGGGCAGAGCTTGCATTGTAGGGCCTTTGCCCGCCCCC
GCAGGCTTGAGCGCGAAGGCTTGAGACCGCAAGTAGGGACCGTGATATCA
AAGCAGGCAGTGGGGGGAGGGTGTGTGGATGGGGGGGGAAGCTTTGCTGG
TTTTAGTACTTGCTGCGGTGAACCAGGTTTAGGGGTTGCCTTGCGTCTTG
GGAGGAGGGCGGCGGGCGGCAAATAACGCTGTGTTTTCATTCCCTTTTCC
TGTACGATGGCGCTCGGTTTTCTCGCGAGGCCACGTGCGGCACAGTGTGC
CAACAGTTGCAGCGTGTGGCACGCCTGCCCCCTTTCCTGTGCTGCAGCTG
GTCTAGGTGTAAGTTCCTACAAAGCAGTACTCGAGTACTTGGAGTACAGC
ATGGTGTGTTTTCCGCGCGAGCTCAAGCGCGCCGCATTCTCTTGCTCTCC
TTCGCACGCGCTGTACAGCAGTACCTAAGTAGAAGTAGTACAGCATGCTG
CCGAAAATACAATACAATCCCGTCGGCCCAACTCCCCGTCCATCCATCCA
TCCACCCCCCAATCCCTCACCATCGCAGCGAGAAGCGCCGTGCACAGTCG
AACGAAACCGACGGCGACATGCATTCCCCCCCGTACTACAGGGCGAGGTG
CAGGCCACGCCACCTCTGTAGTAGTTTGACATCACATCGCATCACTGTCT
CCCTGGGATATGCACCCCCCACCGCCCCCACATACCAGGCTGGTCCGCGC
CGCAAGCCGCCAGGCCGTGGACACCGCCCTGGCCGACCGCTTGCTGGACA
CCCTGGCCTCCGCCGCGGGCGACCCGGACTCGTACGTCTACCTCGCCGCC
GTGCAGGGCCTGGCCGCCCTCGCCAACGCCTCCCCGGCCCACTGCATCCC
GCGCCTCGTGGGCCTTTTCTTGGGGCGGGCTCCGCCGCCGCCACCGCCGC
CCCCTCCTTCTCCTCCTCCCATAATAATGAGGACGACCCGCCCCGTGACG
CTCCTGGCCCCGGTGGAGCAGCGTAATGGCGGCGGTCGGGGCGGCGCAGA
GGCGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:1329933..1331388+

>mRNA_S-ischiensis_contig11.2121.1 ID=mRNA_S-ischiensis_contig11.2121.1|Name=mRNA_S-ischiensis_contig11.2121.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=876bp|location=Sequence derived from alignment at S-ischiensis_contig11:1329933..1331388+ (Schizocladia ischiensis KU_0333)
GGGGGGGAGGCTTCACTGGAGGAGGCAAGGGGCCGCCTTCTGGAGGCGGT
TGCGGCGGCCAAGCAGGATCTTCTGAGCGACGAGCCCCCCATGAGGGCCC
GGGGGGTCGTGACGCTCACGAGGGGGGGGAGGCTTCACTGGAGGAGGCAA
GGGGCCGCCTTCTGGAGGCGGTTGCGGCGGCCAAGCAGGATCTTCTGAGC
GACGAGCCCCCCATGAGGGCCCGGGGGGTCGTGACGCTCACGAGGCTGGT
CCGCGCCGCAAGCCGCCAGGCCGTGGACACCGCCCTGGCCGACCGCTTGC
TGGACACCCTGGCCTCCGCCGCGGGCGACCCGGACTCGTACGTCTACCTC
GCCGCCGTGCAGGGCCTGGCCGCCCTCGCCAACGCCTCCCCGGCCCACTG
CATCCCGCGCCTCGTGGGCCTTTTCTTGGGGCGGGCTCCGCCGCCGCCAC
CGCCGCCCCCTCCTTCTCCTCCTCCCATAATAATGAGGACGACCCGCCCC
GTGACGCTCCTGGCCCCGGTGGAGCAGCGTAATGGCGGCGGTCGGGGCGG
CGCAGAGGCGGCTGGTCCGCGCCGCAAGCCGCCAGGCCGTGGACACCGCC
CTGGCCGACCGCTTGCTGGACACCCTGGCCTCCGCCGCGGGCGACCCGGA
CTCGTACGTCTACCTCGCCGCCGTGCAGGGCCTGGCCGCCCTCGCCAACG
CCTCCCCGGCCCACTGCATCCCGCGCCTCGTGGGCCTTTTCTTGGGGCGG
GCTCCGCCGCCGCCACCGCCGCCCCCTCCTTCTCCTCCTCCCATAATAAT
GAGGACGACCCGCCCCGTGACGCTCCTGGCCCCGGTGGAGCAGCGTAATG
GCGGCGGTCGGGGCGGCGCAGAGGCG
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