prot_S-ischiensis_contig107.1901.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig107.1901.1
Unique Nameprot_S-ischiensis_contig107.1901.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length268
Homology
BLAST of mRNA_S-ischiensis_contig107.1901.1 vs. uniprot
Match: D8LQZ5_ECTSI (RECA_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQZ5_ECTSI)

HSP 1 Score: 229 bits (585), Expect = 1.020e-69
Identity = 117/212 (55.19%), Postives = 157/212 (74.06%), Query Frame = 0
Query:   44 LGGWLSTGADSLDQMLSTGLLVHRVTELVGQTATGKTQLCMTAAVLAAAHNIKVLYMDTANGANPRRLLSIAKERY---RGRLAADGLDGLLERIEVVKAFELLAVTNTLTAFQDGVASGGDGSRYSGVQLVILDSVTAVVAPILGGERNPAGHGLMSDLGQLLNRVAFECSCSVLVTNSTVGGRDEEGQATGPKAALGATWECVPSVRIML 252
            +GG+++TG+DSLD +L  GL++H V E+VG++++GKTQLC+TAAV AA+H I VLY+DTANG + RR+  IA+ RY    G + A  +D LL+R+ VV+AF++  V + L A+ DGV  GG    YS  +LVILDSVTAV++P+LGG +NPAGHGLM+ LG LLNR A +CS  VLV NSTV  R    +  GP+AALG TWE VPS+R++L
Sbjct:  155 VGGFVTTGSDSLDNLLCKGLMLHHVVEVVGRSSSGKTQLCLTAAVAAASHGIGVLYIDTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRVVRAFDISRVMSALVAYIDGVMEGGRNGVYSDCRLVILDSVTAVISPLLGGFKNPAGHGLMASLGHLLNRAASQCSACVLVANSTVAPRGIS-EEEGPRAALGLTWEGVPSIRVLL 365          
BLAST of mRNA_S-ischiensis_contig107.1901.1 vs. uniprot
Match: A0A6H5L2A5_9PHAE (Rad51 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A5_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 5.230e-43
Identity = 79/140 (56.43%), Postives = 102/140 (72.86%), Query Frame = 0
Query:   81 QLCMTAAVLAAAHNIKVLYMDTANGANPRRLLSIAKERY---RGRLAADGLDGLLERIEVVKAFELLAVTNTLTAFQDGVASGGDGSRYSGVQLVILDSVTAVVAPILGGERNPAGHGLMSDLGQLLNRVAFECSCSVLV 217
            QLC+TAAV AA+H I VLY+DTANG + RR+  IA+ RY    G +AA  +D LL+R+ VV+AF++  V + L A+ DGV  GG    YS  +L+ILDSVTAV++P+LGG +NPAGHGLM+ LG LLNR A +CS  VLV
Sbjct:   13 QLCLTAAVAAASHGIGVLYIDTANGCSVRRMQQIARSRYADANGEMAARQVDALLDRLRVVRAFDVSRVMSALVAYIDGVMEGGRNGVYSDCRLIILDSVTAVISPLLGGFKNPAGHGLMASLGHLLNRAASQCSACVLV 152          
BLAST of mRNA_S-ischiensis_contig107.1901.1 vs. uniprot
Match: UPI0018D9AD9F (DNA repair protein RAD51 homolog 4-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D9AD9F)

HSP 1 Score: 135 bits (340), Expect = 2.610e-34
Identity = 88/222 (39.64%), Postives = 125/222 (56.31%), Query Frame = 0
Query:   48 LSTGADSLDQMLSTGLLVHRVTELVGQTATGKTQLCMT-AAVLAAAHNIKVLYMDTANGANPRRLLSIAKERYRGRLAADG-----LDGLLERIEVVKAFELLAVTNTLTAFQDGVASGGDGSRYSGVQLVILDSVTAVVAPILGGERNPAGHGLMSDLGQLLNRVAFECSCSVLVTNSTVGGRDEEGQATGPKAALGATWECVPSVRIMLRADHAPGSVRC 263
            LSTG  SLD++L  GL    +TE+ G  ATGKTQLCMT AA +A      VLY+DT  G + +RL  I        +AA G     +    +R+   + F+L  + + L   +  + SG D + Y+ ++LV++DSVTAVVAP+LGG++   GHG+M  L + L  +A E S +VL+TN+ V      G  T  K ALG TW  VP  R++L  D +  +  C
Sbjct:   82 LSTGCSSLDELLDGGLYTSELTEITGGPATGKTQLCMTTAASVATTAQQNVLYIDTNGGFSSQRLQDI--------MAARGNTDKIMAAAFQRLRCARTFDLFELLSLLEMTKSSMDSGSD-AFYASLKLVVVDSVTAVVAPVLGGQQTE-GHGMMIHLARSLKALAVEYSVAVLLTNNQV-----RGDGTQRKPALGRTWSHVPHCRLLLTHDRSDDASLC 288          
BLAST of mRNA_S-ischiensis_contig107.1901.1 vs. uniprot
Match: UPI001BB27994 (DNA repair protein RAD51 homolog 4-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB27994)

HSP 1 Score: 134 bits (338), Expect = 4.800e-34
Identity = 88/215 (40.93%), Postives = 129/215 (60.00%), Query Frame = 0
Query:   47 WLSTGADSLDQMLSTGLLVHRVTELVGQTATGKTQLCMT-AAVLAAAHNIKVLYMDTANGANPRRLLSI-AKERYRGRLAADGLDGLLERIEVVKAFELLAVTNTLTAFQDGVASGGDGSRYSGVQLVILDSVTAVVAPILGGERNPAGHGLMSDLGQLLNRVAFECSCSVLVTNSTVGGRDEEGQATGPKAALGATWECVPSVRIMLRADHAPG 259
            +LSTG DS+D++L +G+    VTE+VGQ A GKTQ C+T A+ +A +    VLY+DT  G +  RL  I A +    ++ A      L+++   K F+L  + + L + +  + SG D   YS ++LV+LDSVTAV+AP+LGG+ +  G G+M  L + L  +A + S +V+V N+ V  R E G+   PK +LG TW  VP  RI LRAD   G
Sbjct:   81 YLSTGCDSIDKLLDSGVYTSEVTEVVGQAAIGKTQFCLTLASCVAVSSEQNVLYVDTNGGFDAGRLHEIIAHKSTSEKITA----AALQKVHCAKTFDLYDLLDLLESIKASIDSGTD-VFYSSLKLVVLDSVTAVLAPLLGGKHSE-GQGMMVHLARSLKSLAADYSIAVVVCNNMV--RGERGE---PKPSLGRTWLSVPHTRIQLRADGRDG 284          
BLAST of mRNA_S-ischiensis_contig107.1901.1 vs. uniprot
Match: A0A7M7LLB9_STRPU (RECA_2 domain-containing protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7LLB9_STRPU)

HSP 1 Score: 130 bits (326), Expect = 2.930e-32
Identity = 81/215 (37.67%), Postives = 124/215 (57.67%), Query Frame = 0
Query:   47 WLSTGADSLDQMLSTGLLVHRVTELVGQTATGKTQLCMT-AAVLAAAHNIKVLYMDTANGANPRRLLSIAKERYRGRLAADGLDGLLERIEVVKAFELLAVTNTLTAFQDGVASGGDGSRYSGVQLVILDSVTAVVAPILGGERNPAGHGLMSDLGQLLNRVAFECSCSVLVTNSTVGGRDEEGQATGPKAALGATWECVPSVRIMLRADHAPGS 260
            +LSTG DS+D++L  G+    +TE+VGQ A GKTQ C+T A+ +A +    VL++DT  G +  RL  I   +             L+++     F+L  + + L + +  + S  + + YS ++LV+LDSVTAV+AP+LGG+ +  G G+M  L + L  +A + S +V++ N+ V  R E G+   PK ALG TW  VP  RI LRAD   G+
Sbjct:   81 YLSTGCDSIDKLLDGGVYTSELTEIVGQAAVGKTQFCLTLASCVAVSSEQNVLFIDTNGGFHASRLHDIIAHKSTSEKITSAA---LQKVHCATTFDLYGLLDLLESIKASIDSASE-AFYSSLKLVVLDSVTAVLAPLLGGKHSE-GQGMMVHLARSLKSLAADYSIAVVICNNMV--RGERGE---PKPALGRTWLTVPHTRIQLRADGKDGN 285          
BLAST of mRNA_S-ischiensis_contig107.1901.1 vs. uniprot
Match: A0A835YM23_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM23_9STRA)

HSP 1 Score: 131 bits (329), Expect = 3.440e-32
Identity = 90/243 (37.04%), Postives = 116/243 (47.74%), Query Frame = 0
Query:   45 GGWLSTGADSLDQMLSTGLLVHRVTELVGQTATGKTQLCMTAAVLAAAHNIKVLYMDTANGANPRRLLSIAKERYRGRLAADGLDGL-LERI----EVVKAFELLAVTNTLTAFQDGVASGGDGSRYSGVQLVILDSVTAVVAPILGGERNPAGHGLMSDLGQLLNRVAFECSCSVLVTNSTVGGR---------------------DEEGQATGPKAALGATWECVPSVRIMLRADHAPGSV 261
            GG L  G  S+D +L  GL + +VTE+VGQT  GKTQLCM+AA +AA+  I VLY+DT NG +PRRL  IA  R     A   L  + +ER      V+ A + LA     T                 ++LVILDS  AV+AP+LGGE N  G   ++ L   L+  A   S +VLVTN  V  R                              +AALGA W   P+VR++L      G V
Sbjct:   96 GGLLQMGCSSIDGLLGGGLALQQVTEVVGQTGAGKTQLCMSAAAVAASSGIGVLYIDTTNGCSPRRLQEIAAARGGSAAAPAALSHITIERCYSLANVLAALDGLATRLVRTPIATAAXXXXXXXXAHAIRLVILDSAAAVLAPLLGGEGNAPGAAALATLAAALSHTALSLSVAVLVTNGAVADRAPXXXXXXXXXGSRGFGXXXXXXXXXXXXKRAALGARWAAAPAVRLLLDGGAQSGRV 338          
BLAST of mRNA_S-ischiensis_contig107.1901.1 vs. uniprot
Match: A0A8B7Y1H2_ACAPL (DNA repair protein RAD51 homolog 4-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Y1H2_ACAPL)

HSP 1 Score: 128 bits (322), Expect = 1.120e-31
Identity = 82/212 (38.68%), Postives = 120/212 (56.60%), Query Frame = 0
Query:   48 LSTGADSLDQMLSTGLLVHRVTELVGQTATGKTQLCMTAAV-LAAAHNIKVLYMDTANGANPRRLLSIAKER-YRGRLAADGLDGLLERIEVVKAFELLAVTNTLTAFQDGVASGGDGSRYSGVQLVILDSVTAVVAPILGGERNPAGHGLMSDLGQLLNRVAFECSCSVLVTNSTVGGRDEEGQATGPKAALGATWECVPSVRIMLRADHA 257
            LSTG  SLD++L  GL    +TE+ G  ATGKTQLCMTAA  + AA    VLY+DT  G + +RL  +   R +  ++ A       +R+   + F+L  + + L   +  + S  D   Y  ++L+ +DS+TAVV+P+LGG++   GHGLM  L + L  +A E S ++L+TN+ V      G  T  K ALG TW  VP  R++L  D +
Sbjct:   82 LSTGCTSLDELLDGGLYTSELTEVTGGPATGKTQLCMTAAANITAAAQQNVLYIDTNGGFSSQRLQDVMAVRGHSDKVMA----AAFQRLRCTRTFDLFELLSLLEITKSSIDSRSD-PFYESLKLITVDSLTAVVSPLLGGQQTE-GHGLMMHLARSLKALAVEYSVAILLTNNQV-----RGDGTQRKPALGRTWSHVPHCRLLLTHDRS 282          
BLAST of mRNA_S-ischiensis_contig107.1901.1 vs. uniprot
Match: A0A2Z6NN32_TRISU (RECA_2 domain-containing protein n=7 Tax=Trifolium TaxID=3898 RepID=A0A2Z6NN32_TRISU)

HSP 1 Score: 128 bits (321), Expect = 1.570e-31
Identity = 80/213 (37.56%), Postives = 121/213 (56.81%), Query Frame = 0
Query:   48 LSTGADSLDQMLSTGLLVHRVTELVGQTATGKTQLCMTAAVLAAAHNIKVLYMDTANGANPRRLLSIAKER--YRGRLAADG--LDGLLERIEVVKAFELLAVTNTLTAFQDGVASGGD-GSRYSGVQLVILDSVTAVVAPILGGERNPAGHGLMSDLGQLLNRVAFECSCSVLVTNSTVGGRDEEGQATGPKAALGATWECVPSVRIMLRAD 255
            LSTG   +D ++  GL V ++TELVG +++GKTQ+C+ +A   A HN  V+Y+DT N  +P+R+     +   Y     AD   L  +L+RI     F++  + + L   ++ + S    G     VQL+I+DS+++++ PIL G   P GH LM   G LL ++A E + +VLVTN  VGG D        K ALG +W+ VP VR++L  D
Sbjct:   88 LSTGCQGIDALIGGGLRVGQLTELVGPSSSGKTQVCLMSASTVAKHNCSVIYLDTGNSFSPQRIAHFIGQSSDYISGNQADRRLLQNVLDRIICYPVFDVYQMFDLLHQLKNNLRSEAQIGKSDRHVQLLIVDSISSLITPILRGS-GPQGHALMISAGFLLKQLAHEHNITVLVTNHVVGGDDGNS-----KPALGESWKSVPHVRLLLSRD 294          
BLAST of mRNA_S-ischiensis_contig107.1901.1 vs. uniprot
Match: A0A8C9DPL2_PROSS (DNA repair protein n=1 Tax=Prolemur simus TaxID=1328070 RepID=A0A8C9DPL2_PROSS)

HSP 1 Score: 126 bits (317), Expect = 7.370e-31
Identity = 84/215 (39.07%), Postives = 125/215 (58.14%), Query Frame = 0
Query:   48 LSTGADSLDQMLSTGLLVHRVTELVGQTATGKTQLCMTAAVLAAAHNIK--VLYMDTANGANPRRLLSIAKERYRGRLAADGLDGLLERIEVVKAFELLAVTNTLTAFQDGVASGGDGSRYSGVQLVILDSVTAVVAPILGGERNPAGHGLMSDLGQLLNRVAFECSCSVLVTNSTVGGRDEEGQATGPKAALGATWECVPSVRIMLRADHAPGS 260
            LSTG DSLD++L TGL    VTE+VG   +GKTQ+C+  A   A H ++  VLY+D++ G    RLL + + R +     +   G L+RI+VV AF++  + N L   ++ +A     S  + V++V++DSVTAVV+P+LGG++   G  LM  L + L  +A +   +V+VTN     RD  G+    K ALG +W  VPS RI+L      G+
Sbjct:   82 LSTGIDSLDKLLDTGLYTGEVTEIVGGPGSGKTQVCLCVAANVA-HGLQQNVLYVDSSGGLTASRLLQLLQARTQDE---EEQAGALQRIQVVHAFDIFQMLNVLQDLRESMAQQVTSSSGT-VKVVVVDSVTAVVSPLLGGQQRE-GFALMMQLARELKTLARDLGTAVVVTNHITRDRDS-GKL---KPALGRSWSFVPSTRILLDTTEGAGA 286          
BLAST of mRNA_S-ischiensis_contig107.1901.1 vs. uniprot
Match: UPI000D1C4F63 (DNA repair protein RAD51 homolog 4 isoform X1 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C4F63)

HSP 1 Score: 125 bits (314), Expect = 1.380e-30
Identity = 83/213 (38.97%), Postives = 122/213 (57.28%), Query Frame = 0
Query:   46 GWLSTGADSLDQMLSTGLLVHRVTELVGQTATGKTQLCM-TAAVLAAAHNIKVLYMDTANGANPRRLLSIAKERYRGRLAA-DGLDGLLERIEVVKAFELLAVTNTLTAFQDGVASGGDGSRYSGVQLVILDSVTAVVAPILGGERNPAGHGLMSDLGQLLNRVAFECSCSVLVTNSTVGGRDEEGQATGPKAALGATWECVPSVRIMLRADH 256
            G LSTG +SLD +L  GL    +TELVG +++GKTQLCM +AA +A  H   V Y+D ++  +  R+L +   R    +A  D +   + RI   K +++  +   L +  D  AS   G  +  ++LVI+D + +V++PILGG  N  GH LM  + Q+L  +A   +  VL+TN+TV   DEE      K ALG +W+ VP VR+ML  DH
Sbjct:   83 GSLSTGFESLDSLLKGGLKDGTITELVGPSSSGKTQLCMHSAACVAYHHKFSVAYVDASSSFSAERVLQMMCGRRCSSIAIEDDVKEAMRRIFCFKVYDVHGLLEVLHSLYDP-ASSFPGPVH--LRLVIVDCLASVLSPILGGN-NAQGHTLMMSVAQILKSIAINRNICVLITNNTVAAEDEE-----LKPALGESWKSVPHVRLMLAKDH 286          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig107.1901.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQZ5_ECTSI1.020e-6955.19RECA_2 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5L2A5_9PHAE5.230e-4356.43Rad51 domain-containing protein n=1 Tax=Ectocarpus... [more]
UPI0018D9AD9F2.610e-3439.64DNA repair protein RAD51 homolog 4-like n=1 Tax=Pa... [more]
UPI001BB279944.800e-3440.93DNA repair protein RAD51 homolog 4-like n=1 Tax=Ly... [more]
A0A7M7LLB9_STRPU2.930e-3237.67RECA_2 domain-containing protein n=1 Tax=Strongylo... [more]
A0A835YM23_9STRA3.440e-3237.04P-loop containing nucleoside triphosphate hydrolas... [more]
A0A8B7Y1H2_ACAPL1.120e-3138.68DNA repair protein RAD51 homolog 4-like n=1 Tax=Ac... [more]
A0A2Z6NN32_TRISU1.570e-3137.56RECA_2 domain-containing protein n=7 Tax=Trifolium... [more]
A0A8C9DPL2_PROSS7.370e-3139.07DNA repair protein n=1 Tax=Prolemur simus TaxID=13... [more]
UPI000D1C4F631.380e-3038.97DNA repair protein RAD51 homolog 4 isoform X1 n=2 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013632DNA recombination and repair protein Rad51-like, C-terminalPFAMPF08423Rad51coord: 43..255
e-value: 1.7E-19
score: 70.1
NoneNo IPR availableGENE3D3.40.50.300coord: 47..264
e-value: 6.4E-38
score: 132.7
NoneNo IPR availablePANTHERPTHR46457FAMILY NOT NAMEDcoord: 47..259
IPR020588DNA recombination and repair protein RecA-like, ATP-binding domainPROSITEPS50162RECA_2coord: 44..221
score: 23.227
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 47..254

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig107contigS-ischiensis_contig107:94412..103249 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig107.1901.1mRNA_S-ischiensis_contig107.1901.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig107 94412..106269 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig107.1901.1 ID=prot_S-ischiensis_contig107.1901.1|Name=mRNA_S-ischiensis_contig107.1901.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=268bp
MRLHFTVPTSTVRDCNCNVQVLDLSTVPVSTVHDCNCTVQVLDLGGWLST
GADSLDQMLSTGLLVHRVTELVGQTATGKTQLCMTAAVLAAAHNIKVLYM
DTANGANPRRLLSIAKERYRGRLAADGLDGLLERIEVVKAFELLAVTNTL
TAFQDGVASGGDGSRYSGVQLVILDSVTAVVAPILGGERNPAGHGLMSDL
GQLLNRVAFECSCSVLVTNSTVGGRDEEGQATGPKAALGATWECVPSVRI
MLRADHAPGSVRCEGGGE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013632DNA_recomb/repair_Rad51_C
IPR020588RecA_ATP-bd
IPR027417P-loop_NTPase