mRNA_S-ischiensis_contig107.1901.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig107.1901.1
Unique NamemRNA_S-ischiensis_contig107.1901.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig107.1901.1 vs. uniprot
Match: D8LQZ5_ECTSI (RECA_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQZ5_ECTSI)

HSP 1 Score: 229 bits (585), Expect = 1.390e-66
Identity = 117/212 (55.19%), Postives = 157/212 (74.06%), Query Frame = 2 
Query:  842 LGGWLSTGADSLDQMLSTGLLVHRVTELVGQTATGKTQLCMTAAVLAAAHNIKVLYMDTANGANPRRLLSIAKERY---RGRLAADGLDGLLERIEVVKAFELLAVTNTLTAFQDGVASGGDGSRYSGVQLVILDSVTAVVAPILGGERNPAGHGLMSDLGQLLNRVAFECSCSVLVTNSTVGGRDEEGQATGPKAALGATWECVPSVRIML 1468
            +GG+++TG+DSLD +L  GL++H V E+VG++++GKTQLC+TAAV AA+H I VLY+DTANG + RR+  IA+ RY    G + A  +D LL+R+ VV+AF++  V + L A+ DGV  GG    YS  +LVILDSVTAV++P+LGG +NPAGHGLM+ LG LLNR A +CS  VLV NSTV  R    +  GP+AALG TWE VPS+R++L
Sbjct:  155 VGGFVTTGSDSLDNLLCKGLMLHHVVEVVGRSSSGKTQLCLTAAVAAASHGIGVLYIDTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRVVRAFDISRVMSALVAYIDGVMEGGRNGVYSDCRLVILDSVTAVISPLLGGFKNPAGHGLMASLGHLLNRAASQCSACVLVANSTVAPRGIS-EEEGPRAALGLTWEGVPSIRVLL 365
[Close]
BLAST of mRNA_S-ischiensis_contig107.1901.1 vs. uniprot
Match: A0A6H5L2A5_9PHAE (Rad51 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A5_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 1.320e-40
Identity = 79/140 (56.43%), Postives = 102/140 (72.86%), Query Frame = 2 
Query:  953 QLCMTAAVLAAAHNIKVLYMDTANGANPRRLLSIAKERY---RGRLAADGLDGLLERIEVVKAFELLAVTNTLTAFQDGVASGGDGSRYSGVQLVILDSVTAVVAPILGGERNPAGHGLMSDLGQLLNRVAFECSCSVLV 1363
            QLC+TAAV AA+H I VLY+DTANG + RR+  IA+ RY    G +AA  +D LL+R+ VV+AF++  V + L A+ DGV  GG    YS  +L+ILDSVTAV++P+LGG +NPAGHGLM+ LG LLNR A +CS  VLV
Sbjct:   13 QLCLTAAVAAASHGIGVLYIDTANGCSVRRMQQIARSRYADANGEMAARQVDALLDRLRVVRAFDVSRVMSALVAYIDGVMEGGRNGVYSDCRLIILDSVTAVISPLLGGFKNPAGHGLMASLGHLLNRAASQCSACVLV 152
[Close]
BLAST of mRNA_S-ischiensis_contig107.1901.1 vs. uniprot
Match: UPI0018D9AD9F (DNA repair protein RAD51 homolog 4-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D9AD9F)

HSP 1 Score: 135 bits (340), Expect = 3.550e-32
Identity = 88/222 (39.64%), Postives = 125/222 (56.31%), Query Frame = 2 
Query:  854 LSTGADSLDQMLSTGLLVHRVTELVGQTATGKTQLCMT-AAVLAAAHNIKVLYMDTANGANPRRLLSIAKERYRGRLAADG-----LDGLLERIEVVKAFELLAVTNTLTAFQDGVASGGDGSRYSGVQLVILDSVTAVVAPILGGERNPAGHGLMSDLGQLLNRVAFECSCSVLVTNSTVGGRDEEGQATGPKAALGATWECVPSVRIMLRADHAPGSVRC 1501
            LSTG  SLD++L  GL    +TE+ G  ATGKTQLCMT AA +A      VLY+DT  G + +RL  I        +AA G     +    +R+   + F+L  + + L   +  + SG D + Y+ ++LV++DSVTAVVAP+LGG++   GHG+M  L + L  +A E S +VL+TN+ V      G  T  K ALG TW  VP  R++L  D +  +  C
Sbjct:   82 LSTGCSSLDELLDGGLYTSELTEITGGPATGKTQLCMTTAASVATTAQQNVLYIDTNGGFSSQRLQDI--------MAARGNTDKIMAAAFQRLRCARTFDLFELLSLLEMTKSSMDSGSD-AFYASLKLVVVDSVTAVVAPVLGGQQTE-GHGMMIHLARSLKALAVEYSVAVLLTNNQV-----RGDGTQRKPALGRTWSHVPHCRLLLTHDRSDDASLC 288
[Close]
BLAST of mRNA_S-ischiensis_contig107.1901.1 vs. uniprot
Match: UPI001BB27994 (DNA repair protein RAD51 homolog 4-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB27994)

HSP 1 Score: 134 bits (338), Expect = 6.340e-32
Identity = 88/215 (40.93%), Postives = 129/215 (60.00%), Query Frame = 2 
Query:  851 WLSTGADSLDQMLSTGLLVHRVTELVGQTATGKTQLCMT-AAVLAAAHNIKVLYMDTANGANPRRLLSI-AKERYRGRLAADGLDGLLERIEVVKAFELLAVTNTLTAFQDGVASGGDGSRYSGVQLVILDSVTAVVAPILGGERNPAGHGLMSDLGQLLNRVAFECSCSVLVTNSTVGGRDEEGQATGPKAALGATWECVPSVRIMLRADHAPG 1489
            +LSTG DS+D++L +G+    VTE+VGQ A GKTQ C+T A+ +A +    VLY+DT  G +  RL  I A +    ++ A      L+++   K F+L  + + L + +  + SG D   YS ++LV+LDSVTAV+AP+LGG+ +  G G+M  L + L  +A + S +V+V N+ V  R E G+   PK +LG TW  VP  RI LRAD   G
Sbjct:   81 YLSTGCDSIDKLLDSGVYTSEVTEVVGQAAIGKTQFCLTLASCVAVSSEQNVLYVDTNGGFDAGRLHEIIAHKSTSEKITA----AALQKVHCAKTFDLYDLLDLLESIKASIDSGTD-VFYSSLKLVVLDSVTAVLAPLLGGKHSE-GQGMMVHLARSLKSLAADYSIAVVVCNNMV--RGERGE---PKPSLGRTWLSVPHTRIQLRADGRDG 284
[Close]
BLAST of mRNA_S-ischiensis_contig107.1901.1 vs. uniprot
Match: A0A7M7LLB9_STRPU (RECA_2 domain-containing protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7LLB9_STRPU)

HSP 1 Score: 130 bits (326), Expect = 3.200e-30
Identity = 81/215 (37.67%), Postives = 124/215 (57.67%), Query Frame = 2 
Query:  851 WLSTGADSLDQMLSTGLLVHRVTELVGQTATGKTQLCMT-AAVLAAAHNIKVLYMDTANGANPRRLLSIAKERYRGRLAADGLDGLLERIEVVKAFELLAVTNTLTAFQDGVASGGDGSRYSGVQLVILDSVTAVVAPILGGERNPAGHGLMSDLGQLLNRVAFECSCSVLVTNSTVGGRDEEGQATGPKAALGATWECVPSVRIMLRADHAPGS 1492
            +LSTG DS+D++L  G+    +TE+VGQ A GKTQ C+T A+ +A +    VL++DT  G +  RL  I   +             L+++     F+L  + + L + +  + S  + + YS ++LV+LDSVTAV+AP+LGG+ +  G G+M  L + L  +A + S +V++ N+ V  R E G+   PK ALG TW  VP  RI LRAD   G+
Sbjct:   81 YLSTGCDSIDKLLDGGVYTSELTEIVGQAAVGKTQFCLTLASCVAVSSEQNVLFIDTNGGFHASRLHDIIAHKSTSEKITSAA---LQKVHCATTFDLYGLLDLLESIKASIDSASE-AFYSSLKLVVLDSVTAVLAPLLGGKHSE-GQGMMVHLARSLKSLAADYSIAVVICNNMV--RGERGE---PKPALGRTWLTVPHTRIQLRADGKDGN 285
[Close]
BLAST of mRNA_S-ischiensis_contig107.1901.1 vs. uniprot
Match: A0A835YM23_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM23_9STRA)

HSP 1 Score: 131 bits (329), Expect = 4.000e-30
Identity = 90/243 (37.04%), Postives = 116/243 (47.74%), Query Frame = 2 
Query:  845 GGWLSTGADSLDQMLSTGLLVHRVTELVGQTATGKTQLCMTAAVLAAAHNIKVLYMDTANGANPRRLLSIAKERYRGRLAADGLDGL-LERI----EVVKAFELLAVTNTLTAFQDGVASGGDGSRYSGVQLVILDSVTAVVAPILGGERNPAGHGLMSDLGQLLNRVAFECSCSVLVTNSTVGGR---------------------DEEGQATGPKAALGATWECVPSVRIMLRADHAPGSV 1495
            GG L  G  S+D +L  GL + +VTE+VGQT  GKTQLCM+AA +AA+  I VLY+DT NG +PRRL  IA  R     A   L  + +ER      V+ A + LA     T                 ++LVILDS  AV+AP+LGGE N  G   ++ L   L+  A   S +VLVTN  V  R                              +AALGA W   P+VR++L      G V
Sbjct:   96 GGLLQMGCSSIDGLLGGGLALQQVTEVVGQTGAGKTQLCMSAAAVAASSGIGVLYIDTTNGCSPRRLQEIAAARGGSAAAPAALSHITIERCYSLANVLAALDGLATRLVRTPIATAAXXXXXXXXAHAIRLVILDSAAAVLAPLLGGEGNAPGAAALATLAAALSHTALSLSVAVLVTNGAVADRAPXXXXXXXXXGSRGFGXXXXXXXXXXXXKRAALGARWAAAPAVRLLLDGGAQSGRV 338
[Close]
BLAST of mRNA_S-ischiensis_contig107.1901.1 vs. uniprot
Match: A0A8B7Y1H2_ACAPL (DNA repair protein RAD51 homolog 4-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Y1H2_ACAPL)

HSP 1 Score: 128 bits (322), Expect = 1.150e-29
Identity = 82/212 (38.68%), Postives = 120/212 (56.60%), Query Frame = 2 
Query:  854 LSTGADSLDQMLSTGLLVHRVTELVGQTATGKTQLCMTAAV-LAAAHNIKVLYMDTANGANPRRLLSIAKER-YRGRLAADGLDGLLERIEVVKAFELLAVTNTLTAFQDGVASGGDGSRYSGVQLVILDSVTAVVAPILGGERNPAGHGLMSDLGQLLNRVAFECSCSVLVTNSTVGGRDEEGQATGPKAALGATWECVPSVRIMLRADHA 1483
            LSTG  SLD++L  GL    +TE+ G  ATGKTQLCMTAA  + AA    VLY+DT  G + +RL  +   R +  ++ A       +R+   + F+L  + + L   +  + S  D   Y  ++L+ +DS+TAVV+P+LGG++   GHGLM  L + L  +A E S ++L+TN+ V      G  T  K ALG TW  VP  R++L  D +
Sbjct:   82 LSTGCTSLDELLDGGLYTSELTEVTGGPATGKTQLCMTAAANITAAAQQNVLYIDTNGGFSSQRLQDVMAVRGHSDKVMA----AAFQRLRCTRTFDLFELLSLLEITKSSIDSRSD-PFYESLKLITVDSLTAVVSPLLGGQQTE-GHGLMMHLARSLKALAVEYSVAILLTNNQV-----RGDGTQRKPALGRTWSHVPHCRLLLTHDRS 282
[Close]
BLAST of mRNA_S-ischiensis_contig107.1901.1 vs. uniprot
Match: A0A2Z6NN32_TRISU (RECA_2 domain-containing protein n=7 Tax=Trifolium TaxID=3898 RepID=A0A2Z6NN32_TRISU)

HSP 1 Score: 128 bits (321), Expect = 1.590e-29
Identity = 80/213 (37.56%), Postives = 121/213 (56.81%), Query Frame = 2 
Query:  854 LSTGADSLDQMLSTGLLVHRVTELVGQTATGKTQLCMTAAVLAAAHNIKVLYMDTANGANPRRLLSIAKER--YRGRLAADG--LDGLLERIEVVKAFELLAVTNTLTAFQDGVASGGD-GSRYSGVQLVILDSVTAVVAPILGGERNPAGHGLMSDLGQLLNRVAFECSCSVLVTNSTVGGRDEEGQATGPKAALGATWECVPSVRIMLRAD 1477
            LSTG   +D ++  GL V ++TELVG +++GKTQ+C+ +A   A HN  V+Y+DT N  +P+R+     +   Y     AD   L  +L+RI     F++  + + L   ++ + S    G     VQL+I+DS+++++ PIL G   P GH LM   G LL ++A E + +VLVTN  VGG D        K ALG +W+ VP VR++L  D
Sbjct:   88 LSTGCQGIDALIGGGLRVGQLTELVGPSSSGKTQVCLMSASTVAKHNCSVIYLDTGNSFSPQRIAHFIGQSSDYISGNQADRRLLQNVLDRIICYPVFDVYQMFDLLHQLKNNLRSEAQIGKSDRHVQLLIVDSISSLITPILRGS-GPQGHALMISAGFLLKQLAHEHNITVLVTNHVVGGDDGNS-----KPALGESWKSVPHVRLLLSRD 294
[Close]
BLAST of mRNA_S-ischiensis_contig107.1901.1 vs. uniprot
Match: A0A8C9DPL2_PROSS (DNA repair protein n=1 Tax=Prolemur simus TaxID=1328070 RepID=A0A8C9DPL2_PROSS)

HSP 1 Score: 126 bits (317), Expect = 6.970e-29
Identity = 84/215 (39.07%), Postives = 125/215 (58.14%), Query Frame = 2 
Query:  854 LSTGADSLDQMLSTGLLVHRVTELVGQTATGKTQLCMTAAVLAAAHNIK--VLYMDTANGANPRRLLSIAKERYRGRLAADGLDGLLERIEVVKAFELLAVTNTLTAFQDGVASGGDGSRYSGVQLVILDSVTAVVAPILGGERNPAGHGLMSDLGQLLNRVAFECSCSVLVTNSTVGGRDEEGQATGPKAALGATWECVPSVRIMLRADHAPGS 1492
            LSTG DSLD++L TGL    VTE+VG   +GKTQ+C+  A   A H ++  VLY+D++ G    RLL + + R +     +   G L+RI+VV AF++  + N L   ++ +A     S  + V++V++DSVTAVV+P+LGG++   G  LM  L + L  +A +   +V+VTN     RD  G+    K ALG +W  VPS RI+L      G+
Sbjct:   82 LSTGIDSLDKLLDTGLYTGEVTEIVGGPGSGKTQVCLCVAANVA-HGLQQNVLYVDSSGGLTASRLLQLLQARTQDE---EEQAGALQRIQVVHAFDIFQMLNVLQDLRESMAQQVTSSSGT-VKVVVVDSVTAVVSPLLGGQQRE-GFALMMQLARELKTLARDLGTAVVVTNHITRDRDS-GKL---KPALGRSWSFVPSTRILLDTTEGAGA 286
[Close]
BLAST of mRNA_S-ischiensis_contig107.1901.1 vs. uniprot
Match: UPI000D1C4F63 (DNA repair protein RAD51 homolog 4 isoform X1 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C4F63)

HSP 1 Score: 125 bits (314), Expect = 1.230e-28
Identity = 83/213 (38.97%), Postives = 122/213 (57.28%), Query Frame = 2 
Query:  848 GWLSTGADSLDQMLSTGLLVHRVTELVGQTATGKTQLCM-TAAVLAAAHNIKVLYMDTANGANPRRLLSIAKERYRGRLAA-DGLDGLLERIEVVKAFELLAVTNTLTAFQDGVASGGDGSRYSGVQLVILDSVTAVVAPILGGERNPAGHGLMSDLGQLLNRVAFECSCSVLVTNSTVGGRDEEGQATGPKAALGATWECVPSVRIMLRADH 1480
            G LSTG +SLD +L  GL    +TELVG +++GKTQLCM +AA +A  H   V Y+D ++  +  R+L +   R    +A  D +   + RI   K +++  +   L +  D  AS   G  +  ++LVI+D + +V++PILGG  N  GH LM  + Q+L  +A   +  VL+TN+TV   DEE      K ALG +W+ VP VR+ML  DH
Sbjct:   83 GSLSTGFESLDSLLKGGLKDGTITELVGPSSSGKTQLCMHSAACVAYHHKFSVAYVDASSSFSAERVLQMMCGRRCSSIAIEDDVKEAMRRIFCFKVYDVHGLLEVLHSLYDP-ASSFPGPVH--LRLVIVDCLASVLSPILGGN-NAQGHTLMMSVAQILKSIAINRNICVLITNNTVAAEDEE-----LKPALGESWKSVPHVRLMLAKDH 286
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig107.1901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQZ5_ECTSI1.390e-6655.19RECA_2 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5L2A5_9PHAE1.320e-4056.43Rad51 domain-containing protein n=1 Tax=Ectocarpus... [more]
UPI0018D9AD9F3.550e-3239.64DNA repair protein RAD51 homolog 4-like n=1 Tax=Pa... [more]
UPI001BB279946.340e-3240.93DNA repair protein RAD51 homolog 4-like n=1 Tax=Ly... [more]
A0A7M7LLB9_STRPU3.200e-3037.67RECA_2 domain-containing protein n=1 Tax=Strongylo... [more]
A0A835YM23_9STRA4.000e-3037.04P-loop containing nucleoside triphosphate hydrolas... [more]
A0A8B7Y1H2_ACAPL1.150e-2938.68DNA repair protein RAD51 homolog 4-like n=1 Tax=Ac... [more]
A0A2Z6NN32_TRISU1.590e-2937.56RECA_2 domain-containing protein n=7 Tax=Trifolium... [more]
A0A8C9DPL2_PROSS6.970e-2939.07DNA repair protein n=1 Tax=Prolemur simus TaxID=13... [more]
UPI000D1C4F631.230e-2838.97DNA repair protein RAD51 homolog 4 isoform X1 n=2 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig107contigS-ischiensis_contig107:94412..106269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score233.0
Seed ortholog evalue1.6e-58
Seed eggNOG ortholog2880.D8LQZ5
Preferred nameRAD51D
KEGG koko:K10871
KEGG Pathwayko03440,map03440
GOsGO:0000003,GO:0000150,GO:0000217,GO:0000228,GO:0000280,GO:0000400,GO:0000707,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000730,GO:0000781,GO:0000784,GO:0002831,GO:0002833,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0008092,GO:0008094,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0015630,GO:0015631,GO:0016043,GO:0016444,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032101,GO:0032103,GO:0032200,GO:0032991,GO:0033061,GO:0033063,GO:0033554,GO:0034622,GO:0034641,GO:0035825,GO:0036297,GO:0042148,GO:0042592,GO:0042623,GO:0043015,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043900,GO:0043902,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044454,GO:0044464,GO:0045003,GO:0046483,GO:0048285,GO:0048518,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051276,GO:0051321,GO:0051716,GO:0051726,GO:0060249,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071824,GO:0071840,GO:0080134,GO:0090304,GO:0090735,GO:0097159,GO:0098687,GO:0140013,GO:0140097,GO:1900424,GO:1900426,GO:1901360,GO:1901363,GO:1903046
EggNOG free text desc.recombinase activity
EggNOG OGsCOG0468@1,KOG1433@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDNA recombination and repair protein Rad51, C-terminal
Ec32 orthologEc-07_002220.1
Exons9
Model size1516
Cds size804
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig107.1901.1prot_S-ischiensis_contig107.1901.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig107 94412..103249 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815571.0803506-CDS-S-ischiensis_contig107:94411..945671622815571.0803506-CDS-S-ischiensis_contig107:94411..94567Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 94412..94567 -
1695739777.1479318-CDS-S-ischiensis_contig107:94411..945671695739777.1479318-CDS-S-ischiensis_contig107:94411..94567Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 94412..94567 -
1622815571.0910103-CDS-S-ischiensis_contig107:96851..969221622815571.0910103-CDS-S-ischiensis_contig107:96851..96922Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 96852..96922 -
1695739777.157987-CDS-S-ischiensis_contig107:96851..969221695739777.157987-CDS-S-ischiensis_contig107:96851..96922Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 96852..96922 -
1622815571.1039212-CDS-S-ischiensis_contig107:98082..981791622815571.1039212-CDS-S-ischiensis_contig107:98082..98179Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 98083..98179 -
1695739777.1675825-CDS-S-ischiensis_contig107:98082..981791695739777.1675825-CDS-S-ischiensis_contig107:98082..98179Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 98083..98179 -
1622815571.1174052-CDS-S-ischiensis_contig107:99107..992241622815571.1174052-CDS-S-ischiensis_contig107:99107..99224Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 99108..99224 -
1695739777.1789205-CDS-S-ischiensis_contig107:99107..992241695739777.1789205-CDS-S-ischiensis_contig107:99107..99224Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 99108..99224 -
1622815571.1280098-CDS-S-ischiensis_contig107:100846..1009661622815571.1280098-CDS-S-ischiensis_contig107:100846..100966Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 100847..100966 -
1695739777.1867843-CDS-S-ischiensis_contig107:100846..1009661695739777.1867843-CDS-S-ischiensis_contig107:100846..100966Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 100847..100966 -
1622815571.1402192-CDS-S-ischiensis_contig107:102115..1021971622815571.1402192-CDS-S-ischiensis_contig107:102115..102197Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 102116..102197 -
1695739777.1952512-CDS-S-ischiensis_contig107:102115..1021971695739777.1952512-CDS-S-ischiensis_contig107:102115..102197Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 102116..102197 -
1622815571.150604-CDS-S-ischiensis_contig107:103088..1032491622815571.150604-CDS-S-ischiensis_contig107:103088..103249Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 103089..103249 -
1695739777.2047698-CDS-S-ischiensis_contig107:103088..1032491695739777.2047698-CDS-S-ischiensis_contig107:103088..103249Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 103089..103249 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815571.1650755-UTR-S-ischiensis_contig107:103249..1038031622815571.1650755-UTR-S-ischiensis_contig107:103249..103803Schizocladia ischiensis KU_0333UTRS-ischiensis_contig107 103250..103803 -
1695739777.214827-UTR-S-ischiensis_contig107:103249..1038031695739777.214827-UTR-S-ischiensis_contig107:103249..103803Schizocladia ischiensis KU_0333UTRS-ischiensis_contig107 103250..103803 -
1622815571.1890352-UTR-S-ischiensis_contig107:105724..1057861622815571.1890352-UTR-S-ischiensis_contig107:105724..105786Schizocladia ischiensis KU_0333UTRS-ischiensis_contig107 105725..105786 -
1695739777.2265472-UTR-S-ischiensis_contig107:105724..1057861695739777.2265472-UTR-S-ischiensis_contig107:105724..105786Schizocladia ischiensis KU_0333UTRS-ischiensis_contig107 105725..105786 -
1622815571.204973-UTR-S-ischiensis_contig107:106173..1062691622815571.204973-UTR-S-ischiensis_contig107:106173..106269Schizocladia ischiensis KU_0333UTRS-ischiensis_contig107 106174..106269 -
1695739777.2370734-UTR-S-ischiensis_contig107:106173..1062691695739777.2370734-UTR-S-ischiensis_contig107:106173..106269Schizocladia ischiensis KU_0333UTRS-ischiensis_contig107 106174..106269 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig107.1901.1

>prot_S-ischiensis_contig107.1901.1 ID=prot_S-ischiensis_contig107.1901.1|Name=mRNA_S-ischiensis_contig107.1901.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=268bp
MRLHFTVPTSTVRDCNCNVQVLDLSTVPVSTVHDCNCTVQVLDLGGWLST
GADSLDQMLSTGLLVHRVTELVGQTATGKTQLCMTAAVLAAAHNIKVLYM
DTANGANPRRLLSIAKERYRGRLAADGLDGLLERIEVVKAFELLAVTNTL
TAFQDGVASGGDGSRYSGVQLVILDSVTAVVAPILGGERNPAGHGLMSDL
GQLLNRVAFECSCSVLVTNSTVGGRDEEGQATGPKAALGATWECVPSVRI
MLRADHAPGSVRCEGGGE
back to top

mRNA from alignment at S-ischiensis_contig107:94412..106269-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig107.1901.1 ID=mRNA_S-ischiensis_contig107.1901.1|Name=mRNA_S-ischiensis_contig107.1901.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=11858bp|location=Sequence derived from alignment at S-ischiensis_contig107:94412..106269- (Schizocladia ischiensis KU_0333)
CCACTAACGCTGCTGCAATGCCACGTCTTGCTCGATTAGGGGTGGACGAC
AGGACCCTGGCCGTCCTGGCATCGCTTCCGGTGCCAATCACCACCGGTGA
GAGGGGATACGTGGGTGGGCGATTGTTTTCGAGTGTCTGGCGAACCATTT
TCGAGGCCTCCCCCTTGAGTACGTGCTCGGGCATGTTTTCTCCTCCCCGA
CGGCCCATGCGCCTTCTGCGCCCCCGTCGCGGACGCACATCTCTGCTAGC
ATTGTGAGGCCATCGGGGTGGGGCTGGACACCTACAAATGTACCTACTTG
CACACGAGGGACATCGATCGCCAATCCCATCCCAGTTCAAATTCAGCAAT
GGTGTCATCAACCCAGGACCTCGAATACGTTGCATTAGACCTTGATTTAA
CGCCATCGTGTCCGCGACGGTCCCTGGTGAGTCAGTGCCAAGCTCGATTT
GCTGCCCCTCCTGTTTCGCGTGCTGTTTGGCAGCCGAGTCCCTCCTGGAA
CGTGACCCGCAGCAGCTCTGTTCGGAGTGTGGTGTCAGCTTGAAGGTGAG
TAACAGTGATGGAATATCTAAGCAAATCAACCTTATTTATCGACGGTACT
GATCTATATATCTATTGATAGTCGATGTTCGATAGTTTGACCCACACTAA
ATCCAAGCAGTTAGTAGCGCCACCCACAAGATCAGTCGAGCCCGATAACC
ATCCACCGATCGAATTCCATCAATTGTGAGCAAGCACACCAATAGGTTTC
GTATACTCTGGCAGAGGCGAGGGCAGACTACTAAGTACCTAGTGTCACTC
GAAGGTGGCTAACCTTCCCCTGATCACGAGCGATGGTCTGCGACTGCAAT
GGCACCAATGCGGCGAATTTGGGAGGGGGATGCCTTTTGCCTGTTTGTTT
AGAACTTCGAAGTACTCCTACTTGGGTAGCGCCTCCTTCGACTGGGTGCC
AAACAAGCTGCATCAGTCCTCCTAGGAGGTAGAGATGCTTCACCACTACT
GCAGTGCTACAAGTAGTAAACTGTGGGGATTTGGGGAGCGAGCAGTGTAC
CACTGGTTAACGCTTGGTTGGCCCTGTGGGTACTTTACAACCCTGCACGC
ATGCCTGTATGAACTGTGCTTCTAAGTACTTGTGAAGCAGAATTGGCCAT
GACCTCCACTGTACTGCACCCTGACTGCACCCTGCAGGCGAAGCTAGCCC
TAGCGTTGCATTTGCCCCGTCCCTACAGTTCTTGCTCTCGGCAATATCAA
CCCTATAGCTTGCTTGCCCTCAATCCGTACGAAGTACAGTACAGTGTACG
AACATTGCAGTAGAGTACAGTGCAGTGTCGGTAAAGTACATTGTAAGTGC
AGTACAGTACATTACAGTACCTACCCATGGTATAGTATACTGTACCGTAC
AGTGGAAGTACAGTGCAGTGTAGGTCAAGTACAGTGTAAGCATGGTCCCG
TATAGTATACTACGGTAAGTACAGTACCGCACAGTACAGTACAGTACATT
ACAGTAAAGTGCAGTGTACAATCATTGCATGAGACGTACAGTGCCGTATA
GGTACAGTGCAGTCTAGGTATAATGCGGTGCAGTGTAAATCCAGTACAGT
ATATGTGCATTGCAGTACAGTACAGTGCCTGAAATCGCACCCCTTCAATG
GCAGACAACGGTGCATAACAGCATGTACTGTGTAGATACCGCTTGCTAGG
CTGAGAGAGGCTTACTCTGGCTACTGCATTTCTACAGTACAGTACTACAG
TACTACTTCGAAGTGTGCACTATAGAGCTGGTACTGAAACTGTATCGTCT
GGTACGCCGAGTGAGGTTTACTTGGTTCTGGTTGCTGCATTACTTTTCTT
GACAAGTTTACTTGAGTGCTACCTGCTCCGTCTCGACCAAGGCGCGGGGT
CAATGGTCTCGGGACTACGGCTAGCACCGTGATTACATACGTAGTACATA
TATATTGCCTTTTACTCCTAAGGGCGGGAGGGAGACTGATCCGTCGTCAA
TGGCGCGTGGTCGATGGTCTTGGGACTACGGCAAGCACAACGTGAGTACA
TGTACTATGTAGGTATATACAGTACTGTTTCAGCTAGTGTACGAGTACAA
GTATTGTATTGCACATGTGCCAATCGATACCGGCTGGTGAGCTGCGTGGG
GCTTGCCAAATCAGGCACTTGCTGCACACTACTGTACTGCTGCAATGCAT
ACCCCACTTGCTCGTAGGTGATAGTACAGTAGTATATATTCACGTGGTGC
TTGCCGTAGTCCCGAGACCATTGACCATTAGTACTACTAGTAGTATTAAT
AGTACTGTAGTACCAACAGGAAAAACACAGGGCGAGGTGCGGGCCACGGC
ACTAAAGGCCTCAACAGTAATTTCCCTCTGAACCCCAAACTTGAAGTTGT
TATTTTGCCCTCCTCCAAGCCTATGCAGTCCCAACCGAAACTGTCAACCT
GCAAACCGCCTGCCAGGCCATCAACAAGCTGCGCTACCTGATTGCCAAAA
AGTGCTTCCCTTCGTGGGTATCGCAAAGCCGCTATCAGGAGGAGGGGCAT
GAGCCACCCCAGGGCGAGGTCGTGGGCATCCAGCAGGCGTCGCAAGGGCA
GCACCAGAGGTTTCTCCTGTCGTTCGAGCCGGCCAGCGCCTTGCACCGCA
AGGTTCACCAAGTACAGTTGGCACTCATGGTGTACTCGAGTACAGTATAA
CTGCTGTGCTCCAGTGTAGCCTTACCTCGCTTGGCTTTCTGTACTCGAGT
ACGAGTATTTCTTTATGTGGTGTACTTGGACCAGGCAGCATTCAGCATGT
GAGCTGTGCGTGGACGAATGTGTGTGAACAGTTAAAGTGCGGTATTGTTT
GTGACCTGCTTGCAATGTGTTTGGCCTGCGTTGTGAATTGTGTGTCAACT
GTACGTGACTGTAGCTGTGCGCCTGCTTGCAATGTGTTTGGCCTGCGTTG
TGAATTGTGTGCCAACTGCACCCATGTCAACTGTACGTGACTGTAATTGT
ACTGTACCCATGTCAACTGTATGCGACTGCACTTTACTGTACCCACATCA
ACTGTACGTGACTGTAACTGTAATGTGCAGGTGCTTGACCTGTCAACTGT
ACCCGTGTCAACTGTACATGATTGTAACTGTACTGTGCAGGTGCTTGACC
TGGGGGGATGGCTCTCCACCGGTGCAGACAGGTGTGGCATAACTTAGCAG
TCCTCGGCCGAGAGAGAGGTCTTTCGGTGCTTCGAAGTGCCTGTGGATGC
CCATCGTCGCCTCTTCACGCACACACATGGCACAGCAACATCCTAGAGTA
GTACATGCGCCGACACATGGTTTGTGCGCACAGAAGGGACATGCATGCAC
GCCCCGACTACGCCCCGACTATGCGGGAAGTGCATCGTTGCAGTAGAAAG
TGTGTCCCTGATCCTCTTACCCCAACTCAGGCTTGAAAAACGCTTCCGCC
AGCATGAGCAACCACTAGTACGAGAACACTCAATTCTTGAATGGGATAAC
CACTAGCATGAGAACACTCAATCCACACACGTGCGATTGTACCTCGTTGC
AATTTATATGAATAAACGCCTTCTTGAGCTTACAATACAGCTTGAAAGTC
GACAACGCTGAGGGTGAACTTGGCAAATGGTCTGTCGCCTGGACCAGTGT
TTGTAGCGCCGTCATATCAGTGCAGCTCGAAAGTCGACACTACGCTGAGG
CTGAACTTGGCGAATGGTTCTGTCACCAACTTGAATGACGCAAGCTTACG
ATGTGATGTGATGTGACGCTAACTCTAATGTACTGTAGTTTGACATCACA
TCACATCAGTGCCCGTCACCAGTCTGGACCAGTTGCTGAGCGCGGGTCTG
TTGGTGCTTTTGATGTGATGTGATGTGATGTTCACTCTAATGCATGGTAG
TTTGACATCACATCACATCAATGTCCCGTGACCAGTCTGGACCAGTTGCT
GCACGGATAATCGCTAATATACGAACACTCAATGCTTGAATGGGATAGCC
ACTAATACGAGAACACTCAATCTCACACACGCGCAATTGTACCTCGTTAC
AATTTGTATGAATCCCCACCAGCCTGGACCAGATGCTGAGCACGGGTCTG
TTGGTGCACCGGGTCACGGAGCTGGTGGGGCAAACAGCCACGGGGAAAAC
TCAGGCAAGCATATGCCATTTTTTTTCATCCAGGTACTCACAACTTACTC
ACAACGACTATACTAAGTACTACACTTACTACTACGAGTACAAGTAGTAG
TAGTACTTCGAAGTAGTAGTAGTTGTAGTTGTTGTATTAACAGGAACAAC
ACAGGGCGAGGTGCCTGGTGGGACAAACAGCCACGGGGAAAACTCAGGCA
AACAGATGTCGAAAGTTAGTTCCTCAAGGTACTCGTATTCACAACAACAA
CAACTACTACTGCTATTCCTAATACGGTAGGTACTTCGAAGTACTACACT
TACTACTACGAGGTTACGGAGCTGGTGGGGCAAACAGCCACGGGGAAAAC
TCAGGCAAGCATGCTTGTGTGTCGATTGTTTTTCCTCCAGGTACCCGTAC
TCACAACAACAACTACTGTACTACTATACCCACTACTGTACTACAGTACA
CTTATCACTACGAGTACAAGTATAGTAGTAGTGTCACGGAGCTGGTGGGG
CTAACAGCCACGGGGAGGACTCAGGCAAGCACGGGGAAAAAAGTTTTTTC
CTCAAGGTACTTGTACTCGCAACAACAACAACAACAACAATATTACTACA
TACCCACTAAGAAGTACTACACTGCCTCGAGTACTACTACAAGTACAAGT
ACTGTTGTAGAATAGCAGTAGTTGTTGTTGTTGTGCTCGAGTAGTACTCG
TAGTAGTAGTTGGGGCGCCCGAGTCAATGTCTACTGTAGCCAGAGGAGCA
TCTTTGGGCTGGTCATATACATGCATGCGAGGCAATTGCACAAGCGCACA
CATATGCTCGAGTAGTGCTTCGAAGTACGAACAGGAACAACACGGGGCAA
GGTGCGGGCCACGTCACTAGAGACCTCACCAGTGGGCCTTCCCTATAGCT
CGCCAGGGGAAATGTGTGTGGTAGTTTATACGTAGTGTAGTGTGTTACAA
TGCTACTTCCTCTTAAGTACCTGCAGTACAAGTGCTTCAGTGGTGCCTCA
GCAAAACTACTTCATGCTCCATCTACTACAGTACCTACATGCGTACGAGT
AGTACGTGTGTCCACCCTGCATACCTAAGCGACATCCCTGACCCCAAACG
CTTGCCAAACCTTGTCGTCATGTCATGTCATGTCGCTTTTTTTCCCTGAG
CAGTTGTGCATGACGGCCGCAGTGCTGGCAGCGGCACACAACATCAAAGT
TCTCTACATGGACACTGCCAACGGCGCGAACCCCCGGCGGCTTCTCAGCA
TTGCAAAGGAGCGCTACAGAGGGGTGAGTATTGCAGTACTACAGCACAGT
ACAGTACAGTATAGCTCAGTACAGTACAGTAGCACTGTACAGTTGTACAT
AGTGTGATAGTACACTGCAGTACAGCACTGACGGCTTCTCAGCATTGCAA
AGGAGCGCTACAGAGGGGTGAATATTGCAGTTCTTCAAAGTACTATAGTA
CAGTACAGTACAGTAAATTAGCACTGTGCAGTAGTGTGGAGTAGTACAGT
ACAGTACATCAAAGTTCTGTACATGGACACTGTCAACGGGGCAAACCCCC
GGCGGCTTCTCAGCATTGCAAAGAAGCGTTGCAGAGGGGCGAGTGTTGCA
GTACTACATTACAGTGCAGTACAGTACAGTAGCACTGTATACTACAGTAG
TGTGATAGGACAGTACAGTAAACTGAGCAAAGTCCATAGAATTGCAAAGG
AGCGCTACAGAGGGGTGAGCATTGCGGCACTACATAACAGTACAGCAGTA
GTACAGTACACAGGACTTCCAAGTAGTACTACAGCACCGTACTGTGGCGC
TTCCAAGTACTGTAGTACTACAATACAGTACTACTTCGCACTTCCAAGTA
GTAGTACGAGTACAGTAAAGTACGTCCAAGTGTGTACAAAGTGTGTACCT
ACCACATGTGCTGTACTTCCAAACACTTCCACGTACTACTGCAGTACAGT
AGTACTTCCAAGTGTGTACAAAGTATGTACCTACCACATGTGCTGTACTT
CCAAGCACTTCCACGTAGTACTGCAGTACAGTAGTACTTCCAAGTAGTAG
TGCAGTACAGTAGTACTTCCAAGTGTGTACAAAGTGTGTACCTACCACAT
GTGCTGTACTTCCAAGCACTTCCACCTAGTACTACAGTACAGTAGTACTT
CCAAGTAGTAGTACGAGTACAGTACAGCACTCGAAGTACTTCCAAGTGTG
TACAAAGTATGTACCTACCACATGTGCTGTACTTCCAAGCGCTTCCAAGT
ACCTACTTGGTACTCACGGCGGACAGGGTTGTCCCGTGCCCTGCGCATGC
CACCGACGGTCTTGTGTGAAAATCAGATCCATAGCCCCAACCCTAATCTT
GTTCTTCCCCTCCACCCCTTTGTTTTTAGTTCGCTGATGTGACAATCACC
ATTACGGACGCTCAATTCTTAATGGGACAACCACTAATACGAGAACACTC
AATCTCACACACGTGCGATTGTACCTCGTTGCAGTTTATATGAATCACAA
CCCCAACCCTGGGGCAGCGCCTGGCGGCGGACAGGCTGGACGTAATTAGG
GGTAATTGGACCTAAAATGAAGGCTAATTAGGCCCTAATTAACCTCTAAG
CGCCAACCCTGACATCCATAACCCTATCGTAACCCCGGGGCAGCGCCTGG
CGGCGGACGGGCTGGACGTACTTAGTGGTACATAGACCTGCAATGAAGGC
TGATTAGGCCCTAATTAACCTCTAAGCGCCAACCCTGACATCCATAACCC
TATCGTAAACCCGGGGCAGCGCCTGGCGGCGGACGGGCTGGACGTAATTA
GAGGTAATTAGACCTACAATGAAGGCTAATTAGGCCGTAATGAACCTCTA
AGCGCCAACCCTGATATCCATAGCCCTATTATAACCCTGGGGCAGCGCCT
GGCAGCGGACGGGCTGGACGGGCTGCTGGAGCGCATCGAGGTGGTCAAGG
CATTCGAACTGTTGGCCGTCACAAACACTCTCACCGCATTCCAAGACGGG
GTCGCGTCGGGGGTGAGTTGCCAACAGTGATGGAATATCGATCAGTAGAT
AGTTATCGGGCTCGACTGGATTTGTGGGTGGCGTTGCTAACTACTTGGTG
TAGGCCACACCATTGTGCCGTTGCGAGACTCGTGTTTCTGCTGGCAGCAA
GGTGCTTGGCGATTGCGGTACAGGGGTCCGGCGCTCACACGGTGTTCCCT
GTTTGCTCACTTCTCCACTGCAGGTACGCAGTGTGGTGGTTCTGCCTACT
CTGTCAATGCCTGCTGCACCGTCGCCTGCCACGCCCCCTAGGGGTACACA
CACGCGCTCTGTCCCATCCCTCTCCCTCCTTTCCCCCCACCCCTCCCCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCTTCCTCCGCGGCCACCTCC
CGTTCCCCACACAACTTTCCCCTGGCGAGCCAAGGGAGGGCCATTGTTGC
GGTCTCTAGTGACGTGGCCCGCACCTCGCCCCATGTTGTTCCTTACAATA
CTTGGATTTAGTGTCGGTCAAACCATCGAACATCGACTATCGAGAGATGT
ATAGATCAGTACTGTCGATGAATAGGTTGGTTCGCTTAGATATTCCATCA
CTGCAGTGCAGTAGGACACCGCACACTCCTCCCTCGGTCTCACGATCGGT
CCAGTTTTCTTTTCAGGTTTGGTACTACTACTACTGTATAGGACCCAACC
GGTTTTATTCGGCACTGCTACTACGTCTTCCTGCCCCCCTTCCTCCCCCT
CCTCCTCCTCCTCCTCCCCGTCCCTCCCCCCCTCCTCCTGTTCTCCCCTT
TCCCACACAAATTCCCCCGGCGCGCTATAAGGAAGGGCCACTGTTGAGGT
CTTTCGTGGTGTGGCCTGCACCTCTCCCTGTGTTGTTCCTGTTAATACTG
TCTGCTCTAAGACTGCTCGGACTGAACACCCCTTTGTCAGGGTGACGGCA
GTCGCTACAGCGGGGTGCAGCTGGTCATCCTGGATTCTGTCACGGCCGTT
GTGGCTCCAATCCTCGGAGGGGAAAGGAATCCGGCAGGTATAAAACCGGT
ATGTAATGTGATGTGATGTCAATAGTGCAGTACCTTCCGATATTGTTATG
TGTTGCAATACCAAATACTTCCAAGTACACGGTACTGTACTGCCGTTGTG
GCTCCAATCCTCGGGGGGGAAAGGAATCCGGCAGGTACAATACTGGTATG
TAATGTGATGTGATGTGATGTGATGTCGATAGTACCTTCCTATTTGTGCT
GTGGTATTGTACTATCGAAATCACATTGCATTATATATTGTAACACCAGT
TTGTAATGTGATGTGATGTCAATACTACAGTACCTTCCTGTATTGTTACG
AGTTGCAACACCAAATACTTCCAAGTACTCCGAAGTACACGGTACTTGTA
CTGCCGTTGTGGCTCCAATCCTCGGGGGGGAAAGGAATCCGGCAGGTACA
ATACTGGTATGTAATGTGATGTGATGTCGATAGTACATTCCTATATTGTG
CTGTGTTGTAACACCAATATGTAGTGTGATGTGCTGGCGATAGTACAATA
CCTTCCTGTATTGTGCTGTGTTGTACTTCCACGTACTCGTTGTACTTCCA
AGTACACAGTACTGGACTGTAGTGTATGCAGCACAGGCCTACTTGTAGTA
CTTCGTATACACTATCAGAATACTGCTGTTAGGGTTTGGGTGTGGCAGGC
CTGCAGTGCCCAAATGCCCTTTACGATAGTAGAGTAGCAGTACTGGGATG
GAGATTACTGTAGCAGAGTAGCAGTACTGGGATAGAGATTGCTCCGCCCT
CGACGGTGCGCGGTAACGTCAATGGTCTCGGGACTAGTACTGTACTGTAG
TACTCGTACTGTAGTACTGTGCAAGTACGGCAAGCCCTGTTAGGGAGGAC
ACATGCTACTGTAGGTGTGTCTGTGCTTGCGGTACATACGTACTGGCGAG
CGAAGGAAGGTTAGCGCCACATTGACGTCTTTAGCAACGTGGCCTGCACC
TCGCCCTGTGTTGCCATTAACTATTCAGTCACTGCGGCAGGACACGGCCT
GATGAGCCATCTGGGACACCTCCTCAACCGTTGTTGTCACTAACTGTTGC
GCTACCCCTGGCGAGCTATATGGAAGGGCCGCTGCTGAGGTCTCTAGCAA
CATGGCCCGCACCTCACCCTGTGTTGTACCTATTAATATTGCTGCAGGAC
ACGGCCTGATGAGCGATCTAGGACAGCTCCTCAACCGGGTGGCCTTTGAG
TGCAGCTGCAGCGTCTTGGTGAGTGAGTTAGGAATGGGTTTCAGAATACC
CAAGTAGCTAGGGGAACCACTTTCAGAACACGCAAGTAGTTAGGGACAGG
GTTGGACTACTCAAGTGATCTAGGTGGCCTTTGAGTGCAGCTGCAGCGTC
TTGGTGAGTGAGTTAGGAATGGGTTTCAGAACACCCAAGTAGTTAAGGGG
AACGACTTTCAGTACACGAGTAGCTAGGGACAGGGTTGGACTACTCAAGT
GATCTAGGACACCTCCTCAACCGGGTGGCCTTCGAATGCTGCTGCAGCAT
CTTGGTGAGTGAGTCAAGTATTTGCACCCGTGCAGGATTCAAGGACCGGG
TTGGACTACTCAAGTACTTCCGTACACGAGTACTCTGTAGTTATAGCTTT
TATGGGACACCTCCTCAACCGGGTGGCCTTTGAGTGCAGGTGCAGCATCT
TGGTGAGTGAGTCCCGACAGGATTCAAGGACAGGGTTTGGCTATTCAAGT
ACTTCCGTACTCGAGTACTGCTGTAGCTATAGTATATCTGGGACACCTCC
TCAACCGGGTGGCCTTTGAGTGCAGCTGCAGCGTCTTGGTGAGTGAGATA
AGTACTTGCACCGGTACAGGATTCAAGGACAAGGGTTGGACTACTCAAGT
ACTTCCGTACTTGAGTACTGCTGTAGTTATAGTATGTCTGAGGCACCTCC
TCGACTGGGTGGCCTTTGAGTGCAGCTGCAGCGTGGTGATGAGTGACTTA
ATACATGTACTTGCTGGACTGCTGAAGTACTGGAATACTACTGTAGTACT
ACAGAGGCTAATTTGTCGGAGGGCAAAGGCAACGCTATGTGCCTTTTGAC
GAGCAAGCACGCAAGGTTATGTCGCAAGACAACTATCAACTGTTTCTTTC
AAGTATCAGCCAGTGGATACAGTACATATGTACATTGTATTGTACCACGG
TAGTACAGCACGGTACTACAGCAGTCTGTGGGATCAGCGGACAGCACATA
TACATTGTACCACGTGAGACAATTTCGGGGGATTATTTCTAACCGGGAAG
GTCCTTAGTTGTCCCGAAAACTCTCCGAAAAGTTTCCCCAGGTCCTGAGG
GAGATTTTACGAGTTTTCCTGCGCGAATCCGACCAGTATTCGGCGAGAAA
AGTTCTCCCGAAAATTGGCATGGGGGGGCAAGATCTCTCCGACAGATTAC
GGCATACATCATACCATGGTAGCACAGTACTACACTAGTCTGTGGGATCC
GGGGACAGTTGAGTAGCGCAGCCTGCCCTCGAACGGTCAATCAAGTGCCC
TACTGCCCTACACTGTGCCGGACACTCTATTCAAGTAGCCAGTGCAGCAG
CAATGTGCAGCTTCTGTAGACCTCAGTCTGCACTCTCTGCACGCATTGGC
TTGTCTTGCGACATACCTTGCGTACATTGCCGACAGCCCTAAGTCGAAAC
TTTAGGTTTGCTCTCGACAGGAGTAGCTATTTGGCCATTGAACCCCAACT
ATACTACTGTATCAATGGATATAGTCAAACCATTTGAGGACAACTAGCTA
TATTACTTCGAGTGTATAGACAAGTCAAAACTTCTGGTTTGGCCTTGACA
GGACTAGCTATTTAGCCATGGACTCTCGCATCCCAAATAGGCCGGGATGG
AGCATGCCGGGTTTGCACCGGCCAGGCCGTGCACTGACCAAGCCCGGAAT
GCCACTATGCCTTGGCGTTGGCAGGCTGGATGAGGGGCCGCTCGCTAGAC
TGCGACAAAGTGTAGCCGTCGGCGAGCACTTGTGAGTCTCTTCACCGTAG
TGTGCTTCGAGTGCTTCGAAGTACTACATACATAGTATATACTATGAAGT
ATATACTAATGGTGCATACTGCAGCACTCTGCTGTGCATACTGAAGTACT
TCGAAGTACTTCCACAAGTACTTTGAAGTACAGTTAAGTGCTCGAAAGCA
GAGTGCACTCGGTGGCATGCACAGGATGGGGCACAATTGTAGCTCTGTGT
CACATAGGAGTGCACACACACACAAACACACACGTGCGCGCGCGCACGCG
CGCGCCCCCACACACGCACACACACGCACACGCACGCACGCACGCACACA
CACATGCACGAAACACCCGCGGCATGTCTTCAACCCGGCACTGCCTTTTT
TCTTTCCCCCCTCCTTGTTCTTCGTTCTTTGATGTGATAGTCACTAATAC
GAGAACACTCAATTCTTGAATGGGACAATCACTACTACGAGAACACTCAA
TCTCACACACGTGGGATTGTACATGGTTACACTTTATATCCATCACCGCC
AGGTGACTAACAGCACGGTGGGCGGGCGGGACGAGGAGGGGCAGGCCACC
GGCCCCAAGGCCGCGTTGGGGGCCACCTGGGAGTGTGTTCCGTCCGTGCG
GATCATGCTGAGGGCCGACCACGCCCCGGGCTCTGTTCGGTGTGAGGGAG
GCGGAGAG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig107:94412..106269-

>mRNA_S-ischiensis_contig107.1901.1 ID=mRNA_S-ischiensis_contig107.1901.1|Name=mRNA_S-ischiensis_contig107.1901.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1608bp|location=Sequence derived from alignment at S-ischiensis_contig107:94412..106269- (Schizocladia ischiensis KU_0333)
ATGCGACTGCACTTTACTGTACCCACATCAACTGTACGTGACTGTAACTG
TAATGTGCAGGTGCTTGACCTGTCAACTGTACCCGTGTCAACTGTACATG
ATTGTAACTGTACTGTGCAGGTGCTTGACCTGGGGGGATGGCTCTCCACC
GGTGCAGACAGATGCGACTGCACTTTACTGTACCCACATCAACTGTACGT
GACTGTAACTGTAATGTGCAGGTGCTTGACCTGTCAACTGTACCCGTGTC
AACTGTACATGATTGTAACTGTACTGTGCAGGTGCTTGACCTGGGGGGAT
GGCTCTCCACCGGTGCAGACAGCCTGGACCAGATGCTGAGCACGGGTCTG
TTGGTGCACCGGGTCACGGAGCTGGTGGGGCAAACAGCCACGGGGAAAAC
TCAGCCTGGACCAGATGCTGAGCACGGGTCTGTTGGTGCACCGGGTCACG
GAGCTGGTGGGGCAAACAGCCACGGGGAAAACTCAGTTGTGCATGACGGC
CGCAGTGCTGGCAGCGGCACACAACATCAAAGTTCTCTACATGGACACTG
CCAACGGCGCGAACCCCCGGCGGCTTCTCAGCATTGCAAAGGAGCGCTAC
AGAGGGTTGTGCATGACGGCCGCAGTGCTGGCAGCGGCACACAACATCAA
AGTTCTCTACATGGACACTGCCAACGGCGCGAACCCCCGGCGGCTTCTCA
GCATTGCAAAGGAGCGCTACAGAGGGCGCCTGGCAGCGGACGGGCTGGAC
GGGCTGCTGGAGCGCATCGAGGTGGTCAAGGCATTCGAACTGTTGGCCGT
CACAAACACTCTCACCGCATTCCAAGACGGGGTCGCGTCGGGGCGCCTGG
CAGCGGACGGGCTGGACGGGCTGCTGGAGCGCATCGAGGTGGTCAAGGCA
TTCGAACTGTTGGCCGTCACAAACACTCTCACCGCATTCCAAGACGGGGT
CGCGTCGGGGGGTGACGGCAGTCGCTACAGCGGGGTGCAGCTGGTCATCC
TGGATTCTGTCACGGCCGTTGTGGCTCCAATCCTCGGAGGGGAAAGGAAT
CCGGCAGGGTGACGGCAGTCGCTACAGCGGGGTGCAGCTGGTCATCCTGG
ATTCTGTCACGGCCGTTGTGGCTCCAATCCTCGGAGGGGAAAGGAATCCG
GCAGGACACGGCCTGATGAGCGATCTAGGACAGCTCCTCAACCGGGTGGC
CTTTGAGTGCAGCTGCAGCGTCTTGGACACGGCCTGATGAGCGATCTAGG
ACAGCTCCTCAACCGGGTGGCCTTTGAGTGCAGCTGCAGCGTCTTGGTGA
CTAACAGCACGGTGGGCGGGCGGGACGAGGAGGGGCAGGCCACCGGCCCC
AAGGCCGCGTTGGGGGCCACCTGGGAGTGTGTTCCGTCCGTGCGGATCAT
GCTGAGGGCCGACCACGCCCCGGGCTCTGTTCGGTGTGAGGGAGGCGGAG
AGGTGACTAACAGCACGGTGGGCGGGCGGGACGAGGAGGGGCAGGCCACC
GGCCCCAAGGCCGCGTTGGGGGCCACCTGGGAGTGTGTTCCGTCCGTGCG
GATCATGCTGAGGGCCGACCACGCCCCGGGCTCTGTTCGGTGTGAGGGAG
GCGGAGAG
back to top