prot_S-ischiensis_contig106.1885.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-ischiensis_contig106.1885.1
Unique Name	prot_S-ischiensis_contig106.1885.1
Type	polypeptide
Organism	Schizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length	222

Homology

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BLAST of mRNA_S-ischiensis_contig106.1885.1 vs. uniprot
Match: A0A6H5KVG3_9PHAE (HECT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVG3_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 4.170e-34
Identity = 83/179 (46.37%), Postives = 100/179 (55.87%), Query Frame = 0

Query:   29 NITCADLLTCETCVGVFDVITEGPNGLECLWCS-----SSIASDASLCVDRSTEQHLCHTGALQDGCGDMVASYVLVLAFAAALCXXXGLALLRRFLAQWTVRQGWA-GAELTRPLLEE--EETSHEAVFRSSLVGEAGEACWRCPVCGFDNRPRSKACDLCGTSQEFAQAYAQEKDVT 199
            N TC+   TCE+CV  F     G   + CLWC+     S       LCV R   Q  C  G LQ  C +    YVLVL  +A L XXX   + R+F+A W  R   A G +L  PLL+   EE  HE +FRSSL   AG A WRCPVCGFDNRP  K CDLCG S EFA+AY ++K+ +
Sbjct:   17 NSTCSKFATCESCVDYF-----GQGDVGCLWCNVPKDESRSVVGGGLCVPRFGAQDSCEFGELQATCQEGAGWYVLVLTLSALLXXXXXXTMARKFVAMWHERWWLASGGDLAVPLLDXXXEEQQHEVIFRSSLTDSAGNASWRCPVCGFDNRPHCKHCDLCGMSSEFAEAYWKDKETS 190

The following BLAST results are available for this feature:

BLAST of mRNA_S-ischiensis_contig106.1885.1 vs. uniprot

BLAST of mRNA_S-ischiensis_contig106.1885.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6H5KVG3_9PHAE	4.170e-34	46.37	HECT domain-containing protein n=2 Tax=Ectocarpus ...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 163..182
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 157..188 score: 8.468
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..93
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 117..222
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 94..116
None	No IPR available	TMHMM	TMhelix		coord: 94..116
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 159..186

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-ischiensis_contig106	contig	S-ischiensis_contig106:225920..230024 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Schizocladia ischiensis KU_0333	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-ischiensis_contig106.1885.1	mRNA_S-ischiensis_contig106.1885.1	Schizocladia ischiensis KU_0333	mRNA	S-ischiensis_contig106 225919..230024 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-ischiensis_contig106.1885.1 ID=prot_S-ischiensis_contig106.1885.1|Name=mRNA_S-ischiensis_contig106.1885.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=222bp
RPRSLSQSAGPSARHRPPTMLGGDAGGENITCADLLTCETCVGVFDVITE
GPNGLECLWCSSSIASDASLCVDRSTEQHLCHTGALQDGCGDMVASYVLV
LAFAAALCCCCGLALLRRFLAQWTVRQGWAGAELTRPLLEEEETSHEAVF
RSSLVGEAGEACWRCPVCGFDNRPRSKACDLCGTSQEFAQAYAQEKDVTA
HGTRLHNVSGAAKEEAPRDGGG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001876	Znf_RanBP2
IPR036443	Znf_RanBP2_sf