prot_S-ischiensis_contig106.1861.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig106.1861.1
Unique Nameprot_S-ischiensis_contig106.1861.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length262
Homology
BLAST of mRNA_S-ischiensis_contig106.1861.1 vs. uniprot
Match: D7FS64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS64_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 4.860e-27
Identity = 68/174 (39.08%), Postives = 90/174 (51.72%), Query Frame = 0
Query:   26 KARSAYNFYLLKRVAELKAMDTGEEHKVLFGQAAGEWKQMGVEKRQPFEDMATADKGRYKRDLTIASLTDDPIVARSLRSHGQGRMVERGRAPLPLWRGEQDH--FCLICRHQAQDKARNGKAGAHSDEHMKMKLVKCSFCRVAYHLQCLLPPLAEQPQG--LWACPQCAAQME 195
            KARSAYNFYLLKR+A+LK     E+H+  F QAAGEW+ M   +R P+EDMA ADK R+++DL IA+   +  +  ++  HGQG     G   L        H   C +C+ +                     L+ C FC   YHL CL PP+   P     WACP C+A +E
Sbjct:   42 KARSAYNFYLLKRIAQLKEEGVVEQHRDRFAQAAGEWRDMTFGERIPYEDMAKADKERHQKDLDIATRNLNAALHGTVPKHGQGMCSAIGFPGLKALAANSPHEDVCAVCKEEGD-------------------LLCCDFCTSTYHLTCLDPPMLSLPSDDVQWACPACSASIE 196          
BLAST of mRNA_S-ischiensis_contig106.1861.1 vs. uniprot
Match: A0A6H5KW77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW77_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.720e-26
Identity = 68/174 (39.08%), Postives = 90/174 (51.72%), Query Frame = 0
Query:   26 KARSAYNFYLLKRVAELKAMDTGEEHKVLFGQAAGEWKQMGVEKRQPFEDMATADKGRYKRDLTIASLTDDPIVARSLRSHGQGRMVERGRAPLPLWRGEQDH--FCLICRHQAQDKARNGKAGAHSDEHMKMKLVKCSFCRVAYHLQCLLPPLAEQPQG--LWACPQCAAQME 195
            KARSAYNFYLLKR+A+LK     E H+  F QAAGEW+ M   +R P+EDMA ADK R+++DL IA+   +  +  ++  HGQG     G + L        H   C +C+ +                     L+ C FC   YHL CL PP+   P     WACP C+A +E
Sbjct:   42 KARSAYNFYLLKRIAQLKEEGVVELHRDRFAQAAGEWRDMTFGERIPYEDMAKADKERHQKDLDIATRNFNAALHGTVPKHGQGMCSAIGFSGLKALAANSPHEDVCAVCKEEGD-------------------LLCCDFCPSTYHLTCLDPPMLSLPPDDVQWACPACSANVE 196          
BLAST of mRNA_S-ischiensis_contig106.1861.1 vs. uniprot
Match: A0A835YZ65_9STRA (PHD-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ65_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 6.160e-18
Identity = 68/207 (32.85%), Postives = 93/207 (44.93%), Query Frame = 0
Query:   24 GPKARSAYNFYLLKRVAELKAMDT-------GEEHKVLFGQAAGEWKQMGVEKRQPFEDMAT-ADKGRYKRDLTIASLTDDPI-----------------------VARSLRSHGQGRMVERGRAP--LP-LWRGEQDHFCLICRHQAQDKARNGKAGAHSDEHMKMKLVKCSFCRVAYHLQCLLPPLAEQPQG-LWACPQCAAQME 195
            G  ARSAYN +L  RV EL+A          G+ H+ LFGQAAGEWK M  + ++ +E  A  A   R    L   +   D                         +AR++ ++GQG      R+   LP +W GE D  C +C          G  G         +L+ C FC V +HL CL P L + P+  LWACPQC+ ++E
Sbjct:   44 GSLARSAYNCFLEARVGELRAAAVLQVGRIDGDGHRALFGQAAGEWKNMDADAKKVYEHQAAKARAARLAAQLASGAPPPDKPRKADRSERRGGDRGPAERKRLGKLARAMAAYGQGMGYSTARSSCWLPRVWEGEHDDECALC----------GGGG---------ELLMCDFCAVTFHLHCLQPELDQAPETPLWACPQCSMRIE 231          
BLAST of mRNA_S-ischiensis_contig106.1861.1 vs. uniprot
Match: D8M658_BLAHO (PHD-type domain-containing protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M658_BLAHO)

HSP 1 Score: 52.8 bits (125), Expect = 1.940e-5
Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 0
Query:  158 LVKCSFCRVAYHLQCLLPPLAEQPQGLWACPQC 190
            L+ C +C +AYH +CL PPL  QPQ  WACP+C
Sbjct:   23 LLCCDYCSLAYHPECLSPPLKSQPQDFWACPRC 55          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig106.1861.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FS64_ECTSI4.860e-2739.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW77_9PHAE1.720e-2639.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YZ65_9STRA6.160e-1832.85PHD-type domain-containing protein n=1 Tax=Tribone... [more]
D8M658_BLAHO1.940e-557.58PHD-type domain-containing protein n=1 Tax=Blastoc... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 129..191
e-value: 2.2E-7
score: 40.5
IPR009071High mobility group box domainPFAMPF09011HMG_box_2coord: 25..87
e-value: 2.4E-7
score: 31.2
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10coord: 25..88
e-value: 1.5E-11
score: 46.3
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 26..88
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 89..196
e-value: 1.0E-12
score: 50.1
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 130..190
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 127..193
score: 9.535
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 123..198

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig106contigS-ischiensis_contig106:58841..64059 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig106.1861.1mRNA_S-ischiensis_contig106.1861.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig106 58839..64059 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig106.1861.1 ID=prot_S-ischiensis_contig106.1861.1|Name=mRNA_S-ischiensis_contig106.1861.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=262bp
RTFKDVKDNARGKPSKDKQMRVMGPKARSAYNFYLLKRVAELKAMDTGEE
HKVLFGQAAGEWKQMGVEKRQPFEDMATADKGRYKRDLTIASLTDDPIVA
RSLRSHGQGRMVERGRAPLPLWRGEQDHFCLICRHQAQDKARNGKAGAHS
DEHMKMKLVKCSFCRVAYHLQCLLPPLAEQPQGLWACPQCAAQMEPPEPP
LVRGKNRNPLPVMPVPILPPRAAAGLGKSTDCHAKGRGCDAKAPHAPATR
GRIPNGRGRAPF
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR009071HMG_box_dom
IPR036910HMG_box_dom_sf
IPR013083Znf_RING/FYVE/PHD
IPR019786Zinc_finger_PHD-type_CS
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD