prot_S-ischiensis_contig1.1147.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig1.1147.1
Unique Nameprot_S-ischiensis_contig1.1147.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length249
Homology
BLAST of mRNA_S-ischiensis_contig1.1147.1 vs. uniprot
Match: D8LF16_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF16_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 6.560e-37
Identity = 81/145 (55.86%), Postives = 98/145 (67.59%), Query Frame = 0
Query:   10 FLFCSGMGGVPREPLSVLRARM--RVKPRAVVVEDLPASAVDDPCPFVPPSQYEVRLDASRGLGLPLEISANRVRVAGFSLAEDGSPLPAQLCGKIRVGDILVAVNRQDLTLMSHSAAVDVLRGLLRLQG--LILLRFAYAQEEP 150
             L  SGM GV R+ +  LR+R   R+    V V +LP SA+DDP PFVPPSQYEVRL+ SRGLGL L I+ N VRV GFS  + G   PAQ CG I+VGD LV VN + L L++H   V VLRGLLR  G  ++LLRFAYA++ P
Sbjct:    1 MLLVSGMMGVKRQCMGTLRSRRESRIPTHLVTVTELPVSAMDDPNPFVPPSQYEVRLNVSRGLGLSLNITGNDVRVKGFSTVQGGDIGPAQACGDIQVGDALVRVNHEQLNLLNHENVVRVLRGLLRTTGSQVLLLRFAYAEDSP 145          
BLAST of mRNA_S-ischiensis_contig1.1147.1 vs. uniprot
Match: A0A835Z5M4_9STRA (PDZ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5M4_9STRA)

HSP 1 Score: 130 bits (327), Expect = 7.780e-31
Identity = 75/149 (50.34%), Postives = 96/149 (64.43%), Query Frame = 0
Query:    2 EEDSAGPGFLFCSGMGGVPREPLSVLRARMRVKPRAVVVEDLPASAVDDPCPFVPPSQYEVRLDASRGLGLPLEISANRVRVAGFSLAEDGSPLPAQLCGKIRVGDILVAVNRQDLTLMSHSAAVDVLRGLLRL-QGLILLRFAYAQEE 149
            EE +AG  F+F  GM G+ R              RA  +  LPAS+VDDP PFVPPSQY  RLDAS+GLG+ L+I+  +VRV GF+ A +G+   AQL G I VGD+L+ VN +DLTLM  +  + VLR L R+ +G + LRFAY QEE
Sbjct:   68 EEGTAGSEFIFAYGMYGIKRI-------------RAASIGSLPASSVDDPSPFVPPSQYIARLDASKGLGINLQITGVKVRVGGFAPAANGAMSAAQLSGIISVGDVLLGVNGRDLTLMRFNDILGVLRALPRIKEGTVTLRFAYGQEE 203          
BLAST of mRNA_S-ischiensis_contig1.1147.1 vs. uniprot
Match: A0A4D9D6T8_9STRA (PDZ domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6T8_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.650e-9
Identity = 42/86 (48.84%), Postives = 51/86 (59.30%), Query Frame = 0
Query:   59 QYEVRLDASRGLGLPLEISANRVRVAGFSLAEDGSPLPAQLCGKIRVGDILVAVNRQDLTLMSHSAAVDVLRGLLRLQGL-ILLRF 143
            +YEV+L AS GLGL L    N V V G +   DG P PAQLCG+IR GD L+AVN   L  ++    + VL  L R +   ILLRF
Sbjct:  675 EYEVQLVASGGLGLDLAFVGNGVVVRGLAFLADGRPSPAQLCGRIRAGDALLAVNGIALEPLALKDKLGVLLALAREEDTEILLRF 760          
BLAST of mRNA_S-ischiensis_contig1.1147.1 vs. uniprot
Match: A0A6H5JMH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH3_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.220e-5
Identity = 30/55 (54.55%), Postives = 35/55 (63.64%), Query Frame = 0
Query:   10 FLFCSGMGGVPREPLSVLRARM--RVKPRAVVVEDLPASAVDDPCPFVPPSQYEV 62
             L  SGM GV R+ L  LR+R   R+      V +LP SA+DDP PFVPPSQYEV
Sbjct:    1 MLLVSGMMGVKRQCLGTLRSRRESRIPAHLATVTELPVSAMDDPNPFVPPSQYEV 55          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1147.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LF16_ECTSI6.560e-3755.86PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835Z5M4_9STRA7.780e-3150.34PDZ domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A4D9D6T8_9STRA1.650e-948.84PDZ domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A6H5JMH3_9PHAE1.220e-554.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001478PDZ domainPFAMPF00595PDZcoord: 96..131
e-value: 7.7E-6
score: 26.2
IPR001478PDZ domainPROSITEPS50106PDZcoord: 59..144
score: 10.617
NoneNo IPR availableGENE3D2.30.42.10coord: 60..153
e-value: 1.2E-9
score: 39.7
IPR036034PDZ superfamilySUPERFAMILY50156PDZ domain-likecoord: 96..132

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7806064..7808587 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1147.1mRNA_S-ischiensis_contig1.1147.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig1 7806064..7808589 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig1.1147.1 ID=prot_S-ischiensis_contig1.1147.1|Name=mRNA_S-ischiensis_contig1.1147.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=249bp
AEEDSAGPGFLFCSGMGGVPREPLSVLRARMRVKPRAVVVEDLPASAVDD
PCPFVPPSQYEVRLDASRGLGLPLEISANRVRVAGFSLAEDGSPLPAQLC
GKIRVGDILVAVNRQDLTLMSHSAAVDVLRGLLRLQGLILLRFAYAQEEP
PPVWPTLPGERPWEAQRGRPSAGGASTAPGSPVPPPHSTSGPAAGHSAAL
GPELRGHRQPGAEEELSALRPSSWHGVGQARQSGTRSLSPPMAGGGKSL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
IPR036034PDZ_sf