mRNA_S-ischiensis_contig1.1147.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1147.1
Unique NamemRNA_S-ischiensis_contig1.1147.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig1.1147.1 vs. uniprot
Match: D8LF16_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF16_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 6.560e-37
Identity = 81/145 (55.86%), Postives = 98/145 (67.59%), Query Frame = 1 
Query:   28 FLFCSGMGGVPREPLSVLRARM--RVKPRAVVVEDLPASAVDDPCPFVPPSQYEVRLDASRGLGLPLEISANRVRVAGFSLAEDGSPLPAQLCGKIRVGDILVAVNRQDLTLMSHSAAVDVLRGLLRLQG--LILLRFAYAQEEP 450
             L  SGM GV R+ +  LR+R   R+    V V +LP SA+DDP PFVPPSQYEVRL+ SRGLGL L I+ N VRV GFS  + G   PAQ CG I+VGD LV VN + L L++H   V VLRGLLR  G  ++LLRFAYA++ P
Sbjct:    1 MLLVSGMMGVKRQCMGTLRSRRESRIPTHLVTVTELPVSAMDDPNPFVPPSQYEVRLNVSRGLGLSLNITGNDVRVKGFSTVQGGDIGPAQACGDIQVGDALVRVNHEQLNLLNHENVVRVLRGLLRTTGSQVLLLRFAYAEDSP 145
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BLAST of mRNA_S-ischiensis_contig1.1147.1 vs. uniprot
Match: A0A835Z5M4_9STRA (PDZ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5M4_9STRA)

HSP 1 Score: 130 bits (327), Expect = 7.780e-31
Identity = 75/149 (50.34%), Postives = 96/149 (64.43%), Query Frame = 1 
Query:    4 EEDSAGPGFLFCSGMGGVPREPLSVLRARMRVKPRAVVVEDLPASAVDDPCPFVPPSQYEVRLDASRGLGLPLEISANRVRVAGFSLAEDGSPLPAQLCGKIRVGDILVAVNRQDLTLMSHSAAVDVLRGLLRL-QGLILLRFAYAQEE 447
            EE +AG  F+F  GM G+ R              RA  +  LPAS+VDDP PFVPPSQY  RLDAS+GLG+ L+I+  +VRV GF+ A +G+   AQL G I VGD+L+ VN +DLTLM  +  + VLR L R+ +G + LRFAY QEE
Sbjct:   68 EEGTAGSEFIFAYGMYGIKRI-------------RAASIGSLPASSVDDPSPFVPPSQYIARLDASKGLGINLQITGVKVRVGGFAPAANGAMSAAQLSGIISVGDVLLGVNGRDLTLMRFNDILGVLRALPRIKEGTVTLRFAYGQEE 203
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BLAST of mRNA_S-ischiensis_contig1.1147.1 vs. uniprot
Match: A0A4D9D6T8_9STRA (PDZ domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6T8_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.650e-9
Identity = 42/86 (48.84%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:  175 QYEVRLDASRGLGLPLEISANRVRVAGFSLAEDGSPLPAQLCGKIRVGDILVAVNRQDLTLMSHSAAVDVLRGLLRLQGL-ILLRF 429
            +YEV+L AS GLGL L    N V V G +   DG P PAQLCG+IR GD L+AVN   L  ++    + VL  L R +   ILLRF
Sbjct:  675 EYEVQLVASGGLGLDLAFVGNGVVVRGLAFLADGRPSPAQLCGRIRAGDALLAVNGIALEPLALKDKLGVLLALAREEDTEILLRF 760
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BLAST of mRNA_S-ischiensis_contig1.1147.1 vs. uniprot
Match: A0A6H5JMH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH3_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.220e-5
Identity = 30/55 (54.55%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:   28 FLFCSGMGGVPREPLSVLRARM--RVKPRAVVVEDLPASAVDDPCPFVPPSQYEV 186
             L  SGM GV R+ L  LR+R   R+      V +LP SA+DDP PFVPPSQYEV
Sbjct:    1 MLLVSGMMGVKRQCLGTLRSRRESRIPAHLATVTELPVSAMDDPNPFVPPSQYEV 55
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LF16_ECTSI6.560e-3755.86PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835Z5M4_9STRA7.780e-3150.34PDZ domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A4D9D6T8_9STRA1.650e-948.84PDZ domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A6H5JMH3_9PHAE1.220e-554.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7806064..7808589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size750
Cds size747
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1147.1prot_S-ischiensis_contig1.1147.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7806064..7808587 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815486.2622042-CDS-S-ischiensis_contig1:7806063..78061461622815486.2622042-CDS-S-ischiensis_contig1:7806063..7806146Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7806064..7806146 +
1695739729.1935713-CDS-S-ischiensis_contig1:7806063..78061461695739729.1935713-CDS-S-ischiensis_contig1:7806063..7806146Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7806064..7806146 +
1622815486.2811224-CDS-S-ischiensis_contig1:7807058..78071581622815486.2811224-CDS-S-ischiensis_contig1:7807058..7807158Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7807059..7807158 +
1695739729.2055228-CDS-S-ischiensis_contig1:7807058..78071581695739729.2055228-CDS-S-ischiensis_contig1:7807058..7807158Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7807059..7807158 +
1622815486.295688-CDS-S-ischiensis_contig1:7807358..78074871622815486.295688-CDS-S-ischiensis_contig1:7807358..7807487Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7807359..7807487 +
1695739729.2156346-CDS-S-ischiensis_contig1:7807358..78074871695739729.2156346-CDS-S-ischiensis_contig1:7807358..7807487Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7807359..7807487 +
1622815486.3072808-CDS-S-ischiensis_contig1:7807641..78077701622815486.3072808-CDS-S-ischiensis_contig1:7807641..7807770Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7807642..7807770 +
1695739729.2280753-CDS-S-ischiensis_contig1:7807641..78077701695739729.2280753-CDS-S-ischiensis_contig1:7807641..7807770Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7807642..7807770 +
1622815486.3259332-CDS-S-ischiensis_contig1:7808281..78085871622815486.3259332-CDS-S-ischiensis_contig1:7808281..7808587Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7808282..7808587 +
1695739729.2381594-CDS-S-ischiensis_contig1:7808281..78085871695739729.2381594-CDS-S-ischiensis_contig1:7808281..7808587Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7808282..7808587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1147.1

>prot_S-ischiensis_contig1.1147.1 ID=prot_S-ischiensis_contig1.1147.1|Name=mRNA_S-ischiensis_contig1.1147.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=249bp
AEEDSAGPGFLFCSGMGGVPREPLSVLRARMRVKPRAVVVEDLPASAVDD
PCPFVPPSQYEVRLDASRGLGLPLEISANRVRVAGFSLAEDGSPLPAQLC
GKIRVGDILVAVNRQDLTLMSHSAAVDVLRGLLRLQGLILLRFAYAQEEP
PPVWPTLPGERPWEAQRGRPSAGGASTAPGSPVPPPHSTSGPAAGHSAAL
GPELRGHRQPGAEEELSALRPSSWHGVGQARQSGTRSLSPPMAGGGKSL
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mRNA from alignment at S-ischiensis_contig1:7806064..7808589+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1147.1 ID=mRNA_S-ischiensis_contig1.1147.1|Name=mRNA_S-ischiensis_contig1.1147.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2526bp|location=Sequence derived from alignment at S-ischiensis_contig1:7806064..7808589+ (Schizocladia ischiensis KU_0333)
GCTGAGGAGGACAGCGCGGGCCCTGGATTTCTTTTCTGCTCAGGCATGGG
GGGTGTGCCACGCGAGCCCCTGTCAGTGCTCAGGTGAGGGTTATGGCAGT
CTCGTCGTTGCTTGGACATTTATTGTACTTCGTAGGTATCCTGGAAAGCC
ACATCCGTTGGGTTGAGATAGTTGTGTTTTGCGGGATGTGCTAGGGACTC
TTCATCTCACCCCCTTGCAGGTGGCCAGAATGTGTCAGTTGCCAGCTGTG
TGGCCTAGAGTACCGGCTGGTGTACAGTACATAGTATGTACTTCAAAGCA
AGATACTGCACTTTTACACCGTGAGAGTAGTACGAGTGCTGTACTCGAGT
ACAGTGCATTTGGAGTTGTGTGCAGCAAGTCAACGGCACATGGTCAATGG
TGTCGGGACTACGGCAATCACAGCGTGAGTACCTACATACTTCAAAGTAT
ACAGCAAATGTTTGACATACAGAGTCGGACCCAGCACAAGAGCTCGTCCG
ATATCCACGATGTTTGAAGCGGGCATTTTCAGACCGCAACATTTGCTCTC
TTGTACCAGTCCTATGTAGTCGTGCACGACTGTTCCGTAGCGTCTCCCCT
TTTGGGAGGACCCCCAAGGTTTCTATGGTCATGGAGCTACTTGCTTTGTA
TTAAGGAAGTACGAAGTACTAAGTACTGTACAGCACAGTACAGTACTGTA
CTGTACAGTACTACTACTTCGAAGGTCCAACTTACTACATACTGGTGATC
CCCCCCCCCCAGCCCCTGTGCGGACGCACCACTGCCTGGCTGCATGCCCA
CCACCTTGGTTTAATTTACCTGCCGCATGTCATGCACATGCCTTGGCCGC
TGTGCCCGGGGCGGTTTGGTGTGTGTGTGTGTGCATGCGTCCGCCGCGCG
TCCGCCCGCCCAACCGCCCGCGTGCGCGTGCATGCTTGCGTGTGTGCGCT
CGTGTGTGGTGGCTGGCTTGTTCACCGGCGGCCGGCTGAACCCAGGGCAC
GGATGCGGGTGAAGCCGCGGGCGGTGGTGGTGGAGGACCTGCCTGCCTCG
GCGGTGGATGACCCATGCCCATTTGTCCCCCCCAGCCAGTACGAGGTGAG
CAGCGAGGATGGGGACAGACAGCCAACAGACAAAACAGACAGTGCGTTGT
TGCGCCTTTCTAGAAAGCGATGGGGACGGACAAGCAGACCGTCCGGTATT
TCGCACGTTGTTTACTTAGAAAGCAATTGGTGGCCCACCCACACTACTTA
GGCTCCCTGCTTCCTCCTGCCGCTCGCGCCATGCATGCCTTGCAGGTGCG
ACTGGACGCGTCGAGGGGCCTGGGGCTGCCCCTGGAGATCTCTGCCAACC
GCGTGCGTGTGGCCGGCTTCTCGCTGGCGGAGGATGGGTCGCCTCTTCCG
GCGCAGCTGTGCGGAAAGATCAGAGTACGTGTGCGCACGAGAATAAGAAC
AACAGTTGACAGCGGCAAACCGCAACGACAATGACCGCAGCAGCGGCCCC
AGACGGCAGGGACACGCACGGACCTATGGATGAAATCAACGCGACAACCA
CCGGGCACGCCCTTTGCCCCAAACGCAGGTGGGAGACATCCTGGTGGCGG
TGAACCGTCAGGACCTGACGCTCATGTCCCACTCGGCGGCGGTGGACGTG
CTCAGGGGCTTGCTCCGCTTGCAGGGCCTCATCCTTCTGCGCTTCGCCTA
CGCCCAGGCGAGTGCACGTGCTCCCGCCCCAGCCCCGGCCCTTCGGACGG
GTGATGCTGCGCCTCGCCCGCCGTCGCGCTCGAGATGACCCCCCCACCAC
CATCCCGCCCACCCTTATGGGCGCATGTTCGTTGGCCGTGACGACGTCAC
ATACTTGGAAGCGCTGTGCTCATGTCGTACCGACTAGTGTAGTGTAGTGT
ACAGTAGTACTTTGAAGTACTTCAAAGTTATACTTGTCTACTTAGTAACT
CTACTTGCGAGTATGTACGTATATGTGGGAAATACCGTTGCAGGCGCGAA
CGAAGCCGTAAGAGAACACCGAGTTCATTGCGTACCTAGGTGGGCGCCAA
GAAGAGCAGGAAGTGTGAGCATCTAGCTGTACTCGTACAACTGATGTTAT
TTCTTGGATGCACTTGGACGTCCCGTGGGCACAGCACAGATTGTTTTATC
GCACCCCTGCCTCGCTCCCTCGCTCCCTCCCTCCCTCCATTCCGTCCTCA
TCTCCCTTTCCCGCGCAGGAGGAACCCCCACCAGTCTGGCCCACCCTACC
AGGGGAGCGCCCGTGGGAGGCACAGCGGGGCCGCCCGTCCGCAGGCGGCG
CCTCCACAGCCCCGGGCTCGCCCGTCCCCCCGCCGCACTCCACCTCGGGC
CCTGCCGCAGGCCACTCCGCGGCGCTGGGCCCGGAACTGCGGGGCCACCG
TCAACCAGGGGCAGAGGAGGAGTTGTCGGCGCTGCGGCCCTCTTCCTGGC
ATGGGGTTGGCCAGGCCCGGCAATCGGGCACTCGTTCCTTGTCCCCGCCC
ATGGCTGGGGGGGGGAAGTCCCTGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7806064..7808589+

>mRNA_S-ischiensis_contig1.1147.1 ID=mRNA_S-ischiensis_contig1.1147.1|Name=mRNA_S-ischiensis_contig1.1147.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1494bp|location=Sequence derived from alignment at S-ischiensis_contig1:7806064..7808589+ (Schizocladia ischiensis KU_0333)
GCTGAGGAGGACAGCGCGGGCCCTGGATTTCTTTTCTGCTCAGGCATGGG
GGGTGTGCCACGCGAGCCCCTGTCAGTGCTCAGGCTGAGGAGGACAGCGC
GGGCCCTGGATTTCTTTTCTGCTCAGGCATGGGGGGTGTGCCACGCGAGC
CCCTGTCAGTGCTCAGGGCACGGATGCGGGTGAAGCCGCGGGCGGTGGTG
GTGGAGGACCTGCCTGCCTCGGCGGTGGATGACCCATGCCCATTTGTCCC
CCCCAGCCAGTACGAGGGCACGGATGCGGGTGAAGCCGCGGGCGGTGGTG
GTGGAGGACCTGCCTGCCTCGGCGGTGGATGACCCATGCCCATTTGTCCC
CCCCAGCCAGTACGAGGTGCGACTGGACGCGTCGAGGGGCCTGGGGCTGC
CCCTGGAGATCTCTGCCAACCGCGTGCGTGTGGCCGGCTTCTCGCTGGCG
GAGGATGGGTCGCCTCTTCCGGCGCAGCTGTGCGGAAAGATCAGAGTGCG
ACTGGACGCGTCGAGGGGCCTGGGGCTGCCCCTGGAGATCTCTGCCAACC
GCGTGCGTGTGGCCGGCTTCTCGCTGGCGGAGGATGGGTCGCCTCTTCCG
GCGCAGCTGTGCGGAAAGATCAGAGTGGGAGACATCCTGGTGGCGGTGAA
CCGTCAGGACCTGACGCTCATGTCCCACTCGGCGGCGGTGGACGTGCTCA
GGGGCTTGCTCCGCTTGCAGGGCCTCATCCTTCTGCGCTTCGCCTACGCC
CAGGTGGGAGACATCCTGGTGGCGGTGAACCGTCAGGACCTGACGCTCAT
GTCCCACTCGGCGGCGGTGGACGTGCTCAGGGGCTTGCTCCGCTTGCAGG
GCCTCATCCTTCTGCGCTTCGCCTACGCCCAGGAGGAACCCCCACCAGTC
TGGCCCACCCTACCAGGGGAGCGCCCGTGGGAGGCACAGCGGGGCCGCCC
GTCCGCAGGCGGCGCCTCCACAGCCCCGGGCTCGCCCGTCCCCCCGCCGC
ACTCCACCTCGGGCCCTGCCGCAGGCCACTCCGCGGCGCTGGGCCCGGAA
CTGCGGGGCCACCGTCAACCAGGGGCAGAGGAGGAGTTGTCGGCGCTGCG
GCCCTCTTCCTGGCATGGGGTTGGCCAGGCCCGGCAATCGGGCACTCGTT
CCTTGTCCCCGCCCATGGCTGGGGGGGGGAAGTCCCTGGAGGAACCCCCA
CCAGTCTGGCCCACCCTACCAGGGGAGCGCCCGTGGGAGGCACAGCGGGG
CCGCCCGTCCGCAGGCGGCGCCTCCACAGCCCCGGGCTCGCCCGTCCCCC
CGCCGCACTCCACCTCGGGCCCTGCCGCAGGCCACTCCGCGGCGCTGGGC
CCGGAACTGCGGGGCCACCGTCAACCAGGGGCAGAGGAGGAGTTGTCGGC
GCTGCGGCCCTCTTCCTGGCATGGGGTTGGCCAGGCCCGGCAATCGGGCA
CTCGTTCCTTGTCCCCGCCCATGGCTGGGGGGGGGAAGTCCCTG
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