prot_S-ischiensis_contig1.1013.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig1.1013.1
Unique Nameprot_S-ischiensis_contig1.1013.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length95
Homology
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BLAST of mRNA_S-ischiensis_contig1.1013.1 vs. uniprot
Match: D8LCE2_ECTSI (Nuclear pore complex protein Nup85 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCE2_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 6.200e-5
Identity = 38/94 (40.43%), Postives = 45/94 (47.87%), Query Frame = 0 
Query:    2 DALTDFYHMWGLAEIFFLARRRLLSAPLVAWLDTY-MGSWDPQTHEGLRCAEEIVRR--------DPSKRLGLARRLLLHGQT-RRAAELLRGH 85
            D LTDFYH+W LAE F L    L +APL+ WL  Y +   D      L   E +           DP+     A R L+ G   RRAAELLR H
Sbjct:  114 DGLTDFYHVWTLAEAFLLDSIPLPAAPLLRWLKMYSLSGEDEAARSELDETERVALEADAAGGSADPNPAYWDALRSLVVGVAPRRAAELLRSH 207
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1013.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCE2_ECTSI6.200e-540.43Nuclear pore complex protein Nup85 n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7003337..7007138 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1013.1mRNA_S-ischiensis_contig1.1013.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig1 7003321..7007138 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig1.1013.1 ID=prot_S-ischiensis_contig1.1013.1|Name=mRNA_S-ischiensis_contig1.1013.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=95bp
MDALTDFYHMWGLAEIFFLARRRLLSAPLVAWLDTYMGSWDPQTHEGLRC
AEEIVRRDPSKRLGLARRLLLHGQTRRAAELLRGHARHGGGGAAE
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