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Homology
BLAST of mRNA_S-ischiensis_contig93.20958.1 vs. uniprot
Match: A0A8A3PI27_9HELO (Uncharacterized protein n=1 Tax=Monilinia vaccinii-corymbosi TaxID=61207 RepID=A0A8A3PI27_9HELO) HSP 1 Score: 65.5 bits (158), Expect = 7.330e-10 Identity = 32/91 (35.16%), Postives = 53/91 (58.24%), Query Frame = 2
Query: 38 SSWGGKFALFLDSVRTRMCNDFPLPCSATNASHCVSEVQARKLLQAGEWFFHYKFTY----QRLLTARLFAGPLLGTLLDNLASFVRKTRE 298
S+W G F D+ + R+CN +PLPCS TNASHCV++ A ++ +AG+W ++Y + QR + ++ G +G ++ L V T +
Sbjct: 295 SAWQGMMDHFADNFQARLCNGYPLPCSPTNASHCVTQDMADEVFRAGDWEWNYYWRANPYAQRYI--QVVEGLFIGEIVSRLERVVNGTTQ 383
BLAST of mRNA_S-ischiensis_contig93.20958.1 vs. uniprot
Match: A0A1D9Q736_SCLS1 (Uncharacterized protein n=3 Tax=Sclerotinia TaxID=5179 RepID=A0A1D9Q736_SCLS1) HSP 1 Score: 61.6 bits (148), Expect = 1.620e-8 Identity = 29/92 (31.52%), Postives = 52/92 (56.52%), Query Frame = 2
Query: 41 SWGGKFALFLDSVRTRMCNDFPLPCSATNASHCVSEVQARKLLQAGEWFFHY-----KFTYQRLLTARLFAGPLLGTLLDNLASFVRKTRED 301
+W G F D+ + R+CN +PLPCS TN+S+CV++ A ++ +AG+W ++Y F Q + ++ G +G ++ L S T ++
Sbjct: 295 AWQGTMDHFADNFQARLCNGYPLPCSPTNSSYCVTQEMAEEVFRAGDWEWNYYWRANPFAQQYI---QVVEGLFIGEVVSRLESVANGTIQE 383
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 391 |
| Cds size | 369 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817418.8092847-CDS-S-ischiensis_contig93:6458..6637 | 1622817418.8092847-CDS-S-ischiensis_contig93:6458..6637 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig93 6459..6637 - |
| 1695741100.8351393-CDS-S-ischiensis_contig93:6458..6637 | 1695741100.8351393-CDS-S-ischiensis_contig93:6458..6637 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig93 6459..6637 - |
| 1622817418.820745-CDS-S-ischiensis_contig93:7334..7458 | 1622817418.820745-CDS-S-ischiensis_contig93:7334..7458 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig93 7335..7458 - |
| 1695741100.8518915-CDS-S-ischiensis_contig93:7334..7458 | 1695741100.8518915-CDS-S-ischiensis_contig93:7334..7458 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig93 7335..7458 - |
| 1622817418.8347712-CDS-S-ischiensis_contig93:8783..8849 | 1622817418.8347712-CDS-S-ischiensis_contig93:8783..8849 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig93 8784..8849 - |
| 1695741100.8662465-CDS-S-ischiensis_contig93:8783..8849 | 1695741100.8662465-CDS-S-ischiensis_contig93:8783..8849 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig93 8784..8849 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817418.8482206-UTR-S-ischiensis_contig93:8849..8870 | 1622817418.8482206-UTR-S-ischiensis_contig93:8849..8870 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig93 8850..8870 - |
| 1695741100.8777106-UTR-S-ischiensis_contig93:8849..8870 | 1695741100.8777106-UTR-S-ischiensis_contig93:8849..8870 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig93 8850..8870 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig93.20958.1 >prot_S-ischiensis_contig93.20958.1 ID=prot_S-ischiensis_contig93.20958.1|Name=mRNA_S-ischiensis_contig93.20958.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=123bp
MAGPSVVMGREVCAIFGQRAHEDVQRLSFALQRDERLPLCFGGSGPQAAA
GRGVVLPLQVYLPAAIDGQAIRRPPVGHAARQPGEFRAKNTRGCGGGGGG
GRGRSTGRTRRCCCGGSGRFGPF back to topmRNA from alignment at S-ischiensis_contig93:6459..8870- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig93.20958.1 ID=mRNA_S-ischiensis_contig93.20958.1|Name=mRNA_S-ischiensis_contig93.20958.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2412bp|location=Sequence derived from alignment at S-ischiensis_contig93:6459..8870- (Schizocladia ischiensis KU_0333)
GGCTGGGCTGTCGAACCGGCCATGGCTGGCCCTTCCGTCGTCATGGGGAG
GGAAGTTTGCGCTATTTTTGGACAGCGTGCGCACGAGGTGAGCGAGACGA
GCGTACTGTACTGTACTCACTGTACTGTACTGTATTGAACCGTATTGCAC
TGTGCTGCATTGGACTGCACTGCACTGCACTGTACTGTACTGTACTGTAC
TGTACTGCAATGTATTTTGCCCTGTGCTGCATTGTACTGTACTGTACTGC
ACTGTACTAAACTGCACTGTACTGCACTGCATTGCACTGTACTCACTGCA
CTCTACGGTAAAGTGGCAGTACAGCACAGTGCGCGGCTGTGCTTGTGACG
GTCTGTGCGTGATTGGATGCGCATTGCGTCGTTGGGACCGCCCGGCCAGC
CTAGGCAGACTTGCCTGGGAACGGAAGTACAGTAGTGTACAGTAGCAACA
GGAACGACACAGGGCGAAGTGCCGGCCACGTCGCTAAATATCTCAACAGT
GGCCCTTCCTTGGCTCGCCAGGGGACGTATGCATGGCGAAGGGGAGAAGG
AGGAGGAGAAGAGGAGGGGGAGGAGGAGGAGGAGGGGGAGGAGGAGGAGG
AGGAGGAGGGGAGGGGGGGGGGGGGGAGGGGGGGGGGGGGAAGGAAGAGG
AAGTGTGCAGCAGTGTAGTGCTGCTGCTATGTTGTGACCCTTCTTGTGCA
GCGCCTCCTCTGGAACGTGCTGGTTTGTAGGCAGCTCTTTTGTGCGGCCC
TGCGCGCTGCAGCTACTGCGCGCCCCACACGGGGAGGGGGGCGGGGGGAG
GAGGGGGAGGGGGGGGGGAAGGAAGAGGAAGTGTGCAGCAGTGTAGTGCT
GCTGCTATGTTGTGACCCTTCTTGTGCAGCGCCTCCTCTGGAACGTGCTG
GTTTGTAGGCAGCTCTTTTGTGCGGCCCTGCGCGCTGCAGCTACTGCGCG
CCCCACACGTGCTGACTATGAAAGTGCACCAGTCATGCCTAGAGATGTTG
CAAGTGTATGAGCATGCGGAGATAGTGCTTGGTTTTGGGGGATTCATAGA
GCGGGCGAAACAATTGTTCAATGCGACTTGGGCCACCTGTACATGTTTTA
GCTCCTTGGCAACCCTTTTCTCTTCTTTTCTGATAGCCTCTTGGCATTCT
CTTTCCGTGCTTCCAAGCGCCTCCAAGCACTGCAGTATGCTTGGGAGTAT
CGTCAGACTGGGACATGTGACAAGCATGTGTCGGGTCAAGCAGCAGGTCA
CGGCACGGCAGTACGAGCACCAACCCAGCCCCTCCTCACTCACTCTCACG
ATGCTCAGACGACTTGCCAAGTGCTGCCGTGCAAGCCAAGCGAGTGCCTC
CCCCACAGTGCCAGACGGACTCCTCACCTCCCTCCAACACAACGCCTGCG
TTTTGCTCGCAGGATGTGCAACGACTTTCCTTTGCCCTGCAGCGCGACGA
ACGCCTCCCACTGTGTTTCGGAGGTTCAGGCCCGCAAGCTGCTGCAGGCC
GGGGAGTGGTTCTTCCACTACAAGTTTACCTACCAGGTGTGATAATATCA
CGTGTGAAAATTGTTATGTGGTTCTTCCACAAGTTTACCTACCAGGTGTG
ATGATTGTGATGTGGTTCTTCCACTATAAGTTTGCCTACCGGTGTGATAA
TTGTGATGCAATTCTTCCACTACAAGTGTAACTACCAGGTGCGATGCCAT
GTAGTGCGATGCATGCCAAACTCTGCGGTTCTTCCACTACAAGTTTGCCG
ACCAGGTGGGACGTGACCAGTGGCAAACTCCGCGGTGATGTAGTCTGACG
TCACATCCTGTAACGTTGTGTCCGACATTATGAACGTAGTTTGAAATACG
GCAGCAAGTTCGACTAAAGCACTACTCGTACAGCTGTACATGGTACTGTA
CATAGTACTCATCTATGCGTGCATGTCATGTCAGGCGACACAAACATGTA
GGCACTCGTGTTGCCGAACCATGTCGAAACTTGTACAGAGCAATAGACCT
CTACTACTGTATGTACCTACATGTAAGGTAGTAGACCTCTACGTAGAGGT
AGCATATATATCAGAGACCATTGACCACCCCCCCATAGGTGCTAACAAAA
TTTTCGTGGATTCTTCTTGCCCCCCCACATCATTGCCTGCAGCGGCTAGT
GACGGCCAGGCCATGTGCGGGCCCCCTGTTGCACGCTGCTAACCCTAACC
CTAACCCGAAACCCTAACCCTCATTGCCTGCAGCGGCTATTGACGGCCAG
GCTATTCGCAGGCCCCCTGTTGGGCACGCTGCTAGACAACCTGGCGAGTT
TCGTGCGAAAAACACGAGAGGATGTGGGGGCGGAGGCGGCGGCGGAAGAG
GCAGAAGCACAGGCCGCACAAGACGCTGCTGCTGCGGCGGCAGCGGCAGA
TTCGGCCCCTTT back to topCoding sequence (CDS) from alignment at S-ischiensis_contig93:6459..8870- >mRNA_S-ischiensis_contig93.20958.1 ID=mRNA_S-ischiensis_contig93.20958.1|Name=mRNA_S-ischiensis_contig93.20958.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=738bp|location=Sequence derived from alignment at S-ischiensis_contig93:6459..8870- (Schizocladia ischiensis KU_0333)
ATGGCTGGCCCTTCCGTCGTCATGGGGAGGGAAGTTTGCGCTATTTTTGG
ACAGCGTGCGCACGAGATGGCTGGCCCTTCCGTCGTCATGGGGAGGGAAG
TTTGCGCTATTTTTGGACAGCGTGCGCACGAGGATGTGCAACGACTTTCC
TTTGCCCTGCAGCGCGACGAACGCCTCCCACTGTGTTTCGGAGGTTCAGG
CCCGCAAGCTGCTGCAGGCCGGGGAGTGGTTCTTCCACTACAAGTTTACC
TACCAGGATGTGCAACGACTTTCCTTTGCCCTGCAGCGCGACGAACGCCT
CCCACTGTGTTTCGGAGGTTCAGGCCCGCAAGCTGCTGCAGGCCGGGGAG
TGGTTCTTCCACTACAAGTTTACCTACCAGCGGCTATTGACGGCCAGGCT
ATTCGCAGGCCCCCTGTTGGGCACGCTGCTAGACAACCTGGCGAGTTTCG
TGCGAAAAACACGAGAGGATGTGGGGGCGGAGGCGGCGGCGGAAGAGGCA
GAAGCACAGGCCGCACAAGACGCTGCTGCTGCGGCGGCAGCGGCAGATTC
GGCCCCTTTCGGCTATTGACGGCCAGGCTATTCGCAGGCCCCCTGTTGGG
CACGCTGCTAGACAACCTGGCGAGTTTCGTGCGAAAAACACGAGAGGATG
TGGGGGCGGAGGCGGCGGCGGAAGAGGCAGAAGCACAGGCCGCACAAGAC
GCTGCTGCTGCGGCGGCAGCGGCAGATTCGGCCCCTTT back to top
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